Entry information : CcriAPx01 ( CHC_T00010024001)
Entry ID 2631
Creation 2005-12-28 (Christophe Dunand)
Last sequence changes 2015-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-02-11 (Achraf Jemmat)
Peroxidase information: CcriAPx01 ( CHC_T00010024001)
Name (synonym) CcriAPx01 ( CHC_T00010024001)
Class Ascorbate peroxidase     [Orthogroup: APx006]*
Taxonomy Eukaryota Florideophyceae Gigartinaceae Chondrus
Organism Chondrus crispus    [TaxId: 2769 ]
Cellular localisation Cytosolic
Tissue types Protoplasts
Thallus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CcriAPx01
start..stop
S start..stop
BgeAPx02 347 5e-123 18..235 1..218
GfiAPx01 344 6e-122 4..235 1..232
GlAPx01 338 3e-119 4..235 1..232
CkoAPx01 328 1e-115 9..234 1..226
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 65881..66594 714  
join(complement(65881..66594))


exon

Literature and cross-references CcriAPx01 ( CHC_T00010024001)
Literature Collen,J. et al., Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc. Natl. Acad. Sci. U.S.A. 110 (13), 5247-5252 (2013)
Protein ref. GenBank:   XP_005716625.1
DNA ref. GenBank:   NW_005179154.1 (66594..65696)
EST ref. GenBank:   CO652586.1 [5' end]   CO652473.1 [3' end]
Cluster/Prediction ref. Genebank:   17324338
Protein sequence: CcriAPx01 ( CHC_T00010024001)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   237
PWM (Da):   %s   26422.43  
PI (pH):   %s   6.37
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEDKLRHLLT ELYKETPCMP IVVRLAWHDS GSYCARTKTG GANGTIRYSP EADFGANNGL GIARNLLEPI KKAVPEVSYA DLYQLGSVVA IEFAGGPKIP FRFGRKDLPQ EKCSPDGRLP 
DATKRMPHLR EIFSRMGFDD KGIVVLSGAH ALGRARKERS GFDGPWTSDP LVFDNSYYQE ILKEDPDPKL LRLASDMALL DDAENRKLVE LYAADKDAFF KDYVEQHVKL SELGMMA 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and 10 ESTs.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGACA AGCTTCGCCA TCTCCTGACG GAGCTCTACA AGGAGACGCC GTGCATGCCG ATCGTGGTGC GGTTGGCGTG GCACGACTCG GGGTCGTACT GCGCGCGCAC GAAGACGGGG  GGAGCCAACG GGACGATCCG GTACTCGCCG GAGGCGGACT TTGGGGCGAA CAACGGGCTC GGGATCGCGC GCAACCTACT AGAGCCGATC AAGAAGGCGG TGCCAGAGGT GTCGTACGCG  GATCTGTATC AGCTAGGGTC CGTGGTGGCG ATTGAGTTTG CCGGCGGGCC GAAGATCCCG TTCCGGTTCG GGCGGAAGGA CCTCCCGCAG GAGAAGTGCT CCCCGGACGG GCGGCTGCCG  GACGCGACCA AGAGGATGCC GCACCTGCGC GAGATCTTCT CCCGCATGGG CTTCGACGAC AAGGGCATCG TGGTGCTCTC CGGCGCGCAC GCGCTGGGCA GGGCCAGGAA GGAGAGGAGC  GGGTTCGACG GGCCGTGGAC CAGCGACCCG CTCGTGTTTG ATAACTCGTA CTACCAGGAG ATCTTAAAGG AGGACCCCGA CCCGAAGCTG CTCAGGCTCG CCAGCGACAT GGCGCTGCTG 
GACGACGCGG AAAACAGAAA GCTGGTCGAG CTGTATGCCG CCGATAAGGA CGCGTTCTTC AAGGACTACG TCGAGCAGCA CGTGAAGCTG AGCGAGTTGG GCATGATGGC GTAG 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGACA AGCTTCGCCA TCTCCTGACG GAGCTCTACA AGGAGACGCC GTGCATGCCG ATCGTGGTGC GGTTGGCGTG GCACGACTCG GGGTCGTACT GCGCGCGCAC GAAGACGGGG  GGAGCCAACG GGACGATCCG GTACTCGCCG GAGGCGGACT TTGGGGCGAA CAACGGGCTC GGGATCGCGC GCAACCTACT AGAGCCGATC AAGAAGGCGG TGCCAGAGGT GTCGTACGCG  GATCTGTATC AGCTAGGGTC CGTGGTGGCG ATTGAGTTTG CCGGCGGGCC GAAGATCCCG TTCCGGTTCG GGCGGAAGGA CCTCCCGCAG GAGAAGTGCT CCCCGGACGG GCGGCTGCCG  GACGCGACCA AGAGGATGCC GCACCTGCGC GAGATCTTCT CCCGCATGGG CTTCGACGAC AAGGGCATCG TGGTGCTCTC CGGCGCGCAC GCGCTGGGCA GGGCCAGGAA GGAGAGGAGC  GGGTTCGACG GGCCGTGGAC CAGCGACCCG CTCGTGTTTG ATAACTCGTA CTACCAGGAG ATCTTAAAGG AGGACCCCGA CCCGAAGCTG CTCAGGCTCG CCAGCGACAT GGCGCTGCTG 
GACGACGCGG AAAACAGAAA GCTGGTCGAG CTGTATGCCG CCGATAAGGA CGCGTTCTTC AAGGACTACG TCGAGCAGCA CGTGAAGCTG AGCGAGTTGG GCATGATGGC GTAG 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCACCAGCAG CAGTTTGACG CTTCAGAACC GCTGTCGGAA CAATGGAAGA CAAGCTTCGC CATCTCCTGA CGGAGCTCTA CAAGGAGACG CCGTGCATGC CGATCGTGGT GCGGTTGGCG  TGGCACGACT CGGGGTCGTA CTGCGCGCGC ACGAAGACGG GGGGAGCCAA CGGGACGATC CGGTACTCGC CGGAGGCGGA CTTTGGGGCG AACAACGGGC TCGGGATCGC GCGCAACCTA  CTAGAGCCGA TCAAGAAGGC GGTGCCAGAG GTGTCGTACG CGGATCTGTA TCAGCTAGGG TCCGTGGTGG CGATTGAGTT TGCCGGCGGG CCGAAGATCC CGTTCCGGTT CGGGCGGAAG  GACCTCCCGC AGGAGAAGTG CTCCCCGGAC GGGCGGCTGC CGGACGCGAC CAAGAGGATG CCGCACCTGC GCGAGATCTT CTCCCGCATG GGCTTCGACG ACAAGGGCAT CGTGGTGCTC  TCCGGCGCGC ACGCGCTGGG CAGGGCCAGG AAGGAGAGGA GCGGGTTCGA CGGGCCGTGG ACCAGCGACC CGCTCGTGTT TGATAACTCG TACTACCAGG AGATCTTAAA GGAGGACCCC  GACCCGAAGC TGCTCAGGCT CGCCAGCGAC ATGGCGCTGC TGGACGACGC GGAAAACAGA AAGCTGGTCG AGCTGTATGC CGCCGATAAG GACGCGTTCT TCAAGGACTA CGTCGAGCAG  CACGTGAAGC TGAGCGAGTT GGGCATGATG GCGTAGAAGG GTCTGGATGC CGAAGCGATG CCGAGGAGGT GCTGAAGTCT TCAGCACCTC TTCAGCCTGA AGAGATGCTT CCAGAATTCG 
GTGCCCGTCA ACGGATCATA CAGCAAATGA GTGTCCGATA GAATAAAGCT CTTAATTTTT GCCGCT 

Retrieve as FASTA