Entry information : CcriAPx02 ( CHC_T00008640001)
Entry ID 2632
Creation 2005-12-28 (Christophe Dunand)
Last sequence changes 2015-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-02-11 (Achraf Jemmat)
Peroxidase information: CcriAPx02 ( CHC_T00008640001)
Name (synonym) CcriAPx02 ( CHC_T00008640001)
Class Ascorbate peroxidase    [Orthogroup: APx006]
Taxonomy Eukaryota Florideophyceae Gigartinaceae Chondrus
Organism Chondrus crispus    [TaxId: 2769 ]
Cellular localisation Cytosolic
Tissue type Thallus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CcriAPx02
start..stop
S start..stop
CcriAPx02_1kP 481 8e-175 59..297 1..239
GfiAPx02 391 3e-139 57..287 1..231
CkoAPx01 357 7e-126 62..287 1..226
CornAPx04 341 1e-119 59..287 1..229
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 356279..357172 894  
complement(join(356279..357172))


exon

Literature and cross-references CcriAPx02 ( CHC_T00008640001)
Literature Collen,J. et al., Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc. Natl. Acad. Sci. U.S.A. 110 (13), 5247-5252 (2013)
Protein ref. GenBank:   XP_005711814. UniProtKB:   R7Q263
DNA ref. GenBank:   NW_005178809.1 (357172..356269)
mRNA ref. GenBank:   XM_005711757.1
EST ref. GenBank:   CO652862.1 [3' end]
Cluster/Prediction ref. Genebank:   17319513
Protein sequence: CcriAPx02 ( CHC_T00008640001)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   297
PWM (Da):   %s   32408.34  
PI (pH):   %s   5.86
Sequence
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Send to Peroxiscan
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MNAFVAPIAV LHAESLCTPS TALRRTTFVT PARTQSRLPT VFLPARRTPP TASLESDVRT ALNKLYDTTP CMPIMVRLAW HDAGTYKVAD GTGGANASIR YLPEKGHAAN NGLNIAMDLL  EPIKAQFPAI SYADLYQLAS VVGIEHSGGP KVPFRMGRTD AGEADTTEDG RLPDADKRMG HLREVFYRMG LNDTEITVLS GAHTLGRAHQ DRSGFDGPWT KVPVVFDNSY FVEILKDEPD 
PDLLRLSSDL ALLDIPETKA LCEKYANDQK AFFDDYILAH QKLSELGCFS TSNISSS 

Retrieve as FASTA  
Remarks Partial sequence from genomic (no intron) and 1 EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACGCTT TCGTCGCCCC GATCGCCGTC CTGCATGCCG AGTCGTTGTG CACCCCGTCC ACGGCCCTCC GCCGCACCAC CTTTGTCACC CCCGCTCGGA CCCAATCTCG TCTCCCCACA  GTCTTTCTCC CTGCGCGACG CACACCTCCC ACCGCTTCCT TGGAATCTGA CGTGCGGACC GCCCTGAACA AGCTCTACGA CACCACGCCC TGCATGCCCA TCATGGTCCG TTTGGCCTGG  CACGACGCCG GCACCTACAA AGTCGCCGAC GGCACAGGCG GCGCCAATGC CTCCATCCGC TACCTCCCTG AGAAGGGCCA CGCCGCCAAC AACGGTCTCA ACATCGCCAT GGATCTGCTC  GAGCCCATCA AGGCCCAGTT CCCGGCCATT TCGTATGCAG ATCTCTATCA GCTCGCCTCC GTCGTCGGGA TAGAGCACTC TGGCGGTCCG AAAGTCCCGT TCCGCATGGG CCGCACCGAC  GCCGGAGAGG CCGACACCAC AGAGGACGGC CGCCTCCCAG ACGCGGACAA GCGCATGGGC CATCTGCGTG AAGTCTTCTA TAGAATGGGC TTGAACGACA CAGAGATTAC CGTGCTTAGT  GGCGCGCACA CCCTGGGCCG CGCGCATCAG GACCGATCTG GCTTTGATGG GCCGTGGACA AAGGTACCTG TCGTCTTTGA TAACTCGTAC TTCGTCGAGA TTCTTAAAGA CGAACCGGAC  CCGGACCTGC TGCGTTTGTC TTCCGATCTT GCGCTTCTAG ATATCCCAGA GACAAAGGCG CTTTGTGAAA AGTACGCGAA CGATCAAAAA GCCTTTTTCG ACGATTACAT CCTAGCCCAC 
CAGAAACTGA GTGAACTGGG ATGCTTCTCT ACTTCAAATA TTTCCTCGTC CTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACGCTT TCGTCGCCCC GATCGCCGTC CTGCATGCCG AGTCGTTGTG CACCCCGTCC ACGGCCCTCC GCCGCACCAC CTTTGTCACC CCCGCTCGGA CCCAATCTCG TCTCCCCACA  GTCTTTCTCC CTGCGCGACG CACACCTCCC ACCGCTTCCT TGGAATCTGA CGTGCGGACC GCCCTGAACA AGCTCTACGA CACCACGCCC TGCATGCCCA TCATGGTCCG TTTGGCCTGG  CACGACGCCG GCACCTACAA AGTCGCCGAC GGCACAGGCG GCGCCAATGC CTCCATCCGC TACCTCCCTG AGAAGGGCCA CGCCGCCAAC AACGGTCTCA ACATCGCCAT GGATCTGCTC  GAGCCCATCA AGGCCCAGTT CCCGGCCATT TCGTATGCAG ATCTCTATCA GCTCGCCTCC GTCGTCGGGA TAGAGCACTC TGGCGGTCCG AAAGTCCCGT TCCGCATGGG CCGCACCGAC  GCCGGAGAGG CCGACACCAC AGAGGACGGC CGCCTCCCAG ACGCGGACAA GCGCATGGGC CATCTGCGTG AAGTCTTCTA TAGAATGGGC TTGAACGACA CAGAGATTAC CGTGCTTAGT  GGCGCGCACA CCCTGGGCCG CGCGCATCAG GACCGATCTG GCTTTGATGG GCCGTGGACA AAGGTACCTG TCGTCTTTGA TAACTCGTAC TTCGTCGAGA TTCTTAAAGA CGAACCGGAC  CCGGACCTGC TGCGTTTGTC TTCCGATCTT GCGCTTCTAG ATATCCCAGA GACAAAGGCG CTTTGTGAAA AGTACGCGAA CGATCAAAAA GCCTTTTTCG ACGATTACAT CCTAGCCCAC 
CAGAAACTGA GTGAACTGGG ATGCTTCTCT ACTTCAAATA TTTCCTCGTC CTAA 

Retrieve as FASTA