Entry information : HaGPx06 (HanXRQChr06g0165811/GPXHA-2 / HaGPx06-1)
Entry ID 2650
Creation 2007-08-13 (Christophe Dunand)
Last sequence changes 2016-05-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-11-23 (Catherine Mathe (Scipio))
Peroxidase information: HaGPx06 (HanXRQChr06g0165811/GPXHA-2 / HaGPx06-1)
Name (synonym) HaGPx06 (HanXRQChr06g0165811/GPXHA-2 / HaGPx06-1)
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Helianthus
Organism Helianthus annuus (Sunflower)    [TaxId: 4232 ]
Cellular localisation Cytosolic
Tissue type Hypocotyls
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value HaGPx06
start..stop
S start..stop
HaGPx08 302 2e-107 1..167 1..166
HaGPx03 303 8e-107 1..167 69..235
HaGPx08_psc8 284 4e-100 1..167 1..166
SpGPx01 281 3e-99 2..164 3..165
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4494286..4494330 45 N° 2 4495199..4495275 77 N° 3 4495355..4495416 62 N° 4 4495549..4495667 119
N° 5 4496388..4496555 168 N° 6 4496653..4496685 33  
join(4494286..4494330,4495199..4495275,4495355..4495416,4495549..4495667,4496388 ..4496555,4496653..4496685)


exon

Literature and cross-references HaGPx06 (HanXRQChr06g0165811/GPXHA-2 / HaGPx06-1)
Literature REFERENCE 1: Roeckel-Drevet,P., Gagne,G., Tourvielle de Labrouhe,D.,Dufaure,J.P., Nicolas,P. and Drevet,J.R. Molecular characterization, organ distribution and stress-mediated induction of two glutathione Peroxidase-encoding mRNAs in sunflower (Helianthus annuus). Physiol. Plantarum 103, 385-394 (1998).
REFERENCE 2: Michelmore,R.W., Knapp,S., Rieseberg,L., Bradford,K., Kesseli,R., Boore,J., Kozik,A., Matvienko,M., Lavelle,D. and Lai,Z. Sunflower (Helianthus annuus) ESTs (set 2) from the Compositae.
Protein ref. UniProtKB:   O23968 [Sequencing error]
DNA ref. HanXRQ genome:   HanXRQChr06 (4494286..4496685)
mRNA ref. GenBank:   Y14707 [Sequencing error]
Cluster/Prediction ref. HanXRQ:   HanXRQChr06g0165811 UniGene:   Han.8718   Han.942
Protein sequence: HaGPx06 (HanXRQChr06g0165811/GPXHA-2 / HaGPx06-1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   167
PWM (Da):   %s   18714.58  
PI (pH):   %s   8.74
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASDSKKTVYDFTVKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDGFEILAFPCNQFGGQEPGSNEEIQEFACTRFKAEYPVFSVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPLSIEKDIKKLLNVA*

Retrieve as FASTA  
Remarks Complete sequence from genomic, 1 cDNA (uncorrect 5' pept signal, any EST to confirm), 6 ESTs (UNIGENE NCBI Han.942) and 10 ESTs (unigene Han.8718). Strain="ANN1312".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTCTGATTCCAAGAAAACAGTTTATGACTTCACTGTTAAGGTTTGATCATTTCTGATTGTTCTTTTTTTTGATCATGGGTTTTAGTTTTCAGTGATCATATCAGTTCTGTTTGTG
ATTAAATTAGGGTTTTTTGATTTTTTTTGATACATTTTTTGGGTTATGTCAAGGAACACATAGATGGGTCCTGATCACTGATGGGACCTGATTATGGAATTTGAGCAATTGGGGTTGGGC
TTTTTGTGTCTTTTCTTGATTCAGTGATTGATTTAATTTGTGGGTACCCTTCTTCCTGACACTTTTTTTACCCAAAAACATTACTTTTGTTAAGTTCTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTAACGGAAATTTGGATAACTGGAGTATCTTGGGTCATAAGCGGAACCACCCGATCTTATACATCAATTTAGGAGGAAATTCAATAAGTCTGGAAAAAACCCTGGA
ATCGACTTGTGGGAATCGAACAGTACCTGATGGGGTTGGGGTTCTTGCATCTGTACTTGATTTAATTATTGATTTAGTTTGTGGGTACCTGTTTCTTGTACTTTTTTGCCCAAAATCAGT
ACTTTTGTAAAGTTGTTTTTTTTTTTTTTTTTGCTTTTATGAAGATTGATTGGTTGTTTGTTTGCAACCCAATAAGGGTATGTTGGAAAAAAAAGTTTTTAACTATTGTTTTTTTAACGG
TTTAAATCACACCGAATCTGCCTTTGGACGGTTTAGTTGTTGATTTTTTTGAACGGTTTAAAATGTTCAAAAAAAAGTTGAACTGTTTATCCTGAATTGGGATAAACAAACAAATTCTAA
TTGTTTTGTTCAAAACAGTTTATTTTAATTGCAAATAATCGGTGATTAATTATTGTGCATCCTTCTACATCAGGATGTGAAAGGGCAAGATGTTGAGCTTAGCAAGTACAAGGGAAAAGT
CTTGCTGATTGTCAATGTTGCTTCACAATG
GTATGCTACAAAATTTTTATTTTATCAACATATTTAATTTACAACATATTTACTGAATGCCACATTTGTTATGTTACAGTGGCTTTACGA
ACTCGAATTATCCTGAGTTGACAACCTTGTACCAGAAGTACAAGGATCAAG
GTTTGTTTTTTTTGCCTTCCTTTTAACCCTTCTGAAACTATCGTATGATATTATAAGTCGTAACCTTTT
GTTTTTCGGCCTGTCGAATGACACCGGAGTCTGAACTGTCTTTGTGATTTAACGATTTTACAGGTTTTGAGATTCTTGCTTTCCCATGCAACCAATTTGGCGGGCAAGAACCCGGATCCA
ATGAAGAAATTCAGGAGTTTGCTTGCACTCGTTTTAAAGCCGAATACCCCGTCTTTAGCAAG
GTTGGTATTGTATACGTAACGTTTTGTTTTCGTAGTTTAAAAAAGATTCATGAGTAAA
GTACACATATGGTTCCTGTGCAGGGGCGGTTCTTAGAAGAGCCGTGGCAGGGCCACGGCCCGGGCAAGTTTTTCGGGCGTAGTGCTAATTTTCCGCATTTCGTTCGAAATTTTTTATATA
TACTATGTTTGGCCCGGGCTTGTCCGGGCTTTTTTTAGTGCCCGTGTCTTTCGGCCCTGGCATGTTCAACGGGCAAGATCCGCCACTGTCCCTGTGGTTTACCAAAATTTTGGATTTGGT
CCCTGGTTTTCCAAAAGTACACAGATGGTCCCTGTGGTTTGCAAATTGTAACTCATTTAGTCTCTAACTTTTTCCAAAAGTACATGGATGGTCCTTGTGGTTTGTACTTTGTAACGTATT
TAGTCCCTAACTTGACATGCTAAAACCTTTAGATTTGTTGGCTGGGGACTAGATGTGTTAGAAAGTGTAAACCACAAGGACCATCTGTGTACTTTTGGAAAGCTAGGGACCAAATCTAAA
ATCCTGGTAAACCACGTGGACCATTCGTGTACTCTACTCAAGATTCGTAATATGGAATAAAACACAACATAAACCACTTTCAAAACATATATCCAAACACCCTCAAGACACTTTCTTGAT
TCCGGATTCATTACACTTTTATCACTCTAAATCTTTGTGTTGTGTTGACTAATGTAATGTAGGTCAATGTGAATGGGAAAGAAGCCGATCCTTTGTACAAGTTCTTGAAGTCGAGCAAAG
GCGGATTTCTTGGTGACAGTATCAAATGGAATTTCACAAAGTTCCTAGTTGACCGTGAGGGGAAGGTCGTTGACCGATATGCACCCACCACCAGCCCTCTGAGCATCGAG
GTATACTATG
TTTCGTATCGTATCGTATCGTAATCTTATCTGTTTAAAAGCTTTAACAATGTTTCTAACATCTATTTTTTGCTGTTGTTAATTGCAGAAGGACATAAAGAAGCTGCTTAACGTCGCTTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTCTGATTCCAAGAAAACAGTTTATGACTTCACTGTTAAGGATGTGAAAGGGCAAGATGTTGAGCTTAGCAAGTACAAGGGAAAAGTCTTGCTGATTGTCAATGTTGCTTCACAA
TG
TGGCTTTACGAACTCGAATTATCCTGAGTTGACAACCTTGTACCAGAAGTACAAGGATCAAGGTTTTGAGATTCTTGCTTTCCCATGCAACCAATTTGGCGGGCAAGAACCCGGATCC
AATGAAGAAATTCAGGAGTTTGCTTGCACTCGTTTTAAAGCCGAATACCCCGTCTTTAGCAAG
GTCAATGTGAATGGGAAAGAAGCCGATCCTTTGTACAAGTTCTTGAAGTCGAGCAAA
GGCGGATTTCTTGGTGACAGTATCAAATGGAATTTCACAAAGTTCCTAGTTGACCGTGAGGGGAAGGTCGTTGACCGATATGCACCCACCACCAGCCCTCTGAGCATCGAG
AAGGACATA
AAGAAGCTGCTTAACGTCGCTTAA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGCACAACA TCAACAAAAC GACCACGTTG CTACTTCTGT ATTCATACAT ATCCACACAC AAAAAGTCAA AATTCGTTTA AATTAATTCT TGATTTTGAT CCAAGAATAG ATCTTTTTAA  TCTGTATAAA TTGAACCCAT TTCAGCTGTT GCAAATCACA CAACTTTCTT TTGCTTTCTT GAATACCCAA TTAAAAAGAT CAAGACTTTA TTGGACCAAA TCATACAATG GCCTCTGATT  CCAAGAAAAC AGTTTATGAC TTCACTGTTA AGGATGTGAA AGGGCAAGAT GTTGAGCTTA GCAAGTACAA GGGAAAAGTC TTGCTGATTG TCAATGTTGC TTCACAATGT GGCTTTACGA  ACTCGAATTA TCCTGAGTTG ACAACCTTGT ACCAGAAGTA CAAGGATCAA GGTTTTGAGA TTCTTGCTTT CCCATGCAAC CAATTTGGCG GGCAAGAACC CGGATCCAAT GAAGAAATTC  AGGAGTTTGC TTGCACTCGT TTTAAAGCCG AATACCCCGT CTTTAGCAAG GTCAATGTGA ATGGGAAAGA AGCCGATCCT TTGTACAAGT TCTTGAAGTC GAGCAAAGGC GGATTTCTTG  GTGACAGTAT CAAATGGAAT TTCACAAAGT TCCTAGTTGA CCGTGAGGGG AAGGTCGTTG ACCGATATGC ACCCACCACC AGCCCTCTGA GCATCGAGAA GGACATAAAG AAGCTGCTTA  ACGTCGCTTA AGTTTCATGA GCGGGTTGGT TCTTGAGAGT CATTTTAGCA ATAAACTAGC AACCGTCGAT GTTATTACTT GTTTGTAAAT TAATTTGTCG GATGTTTTCG TGTTTAGTGT  GGTGTTAAAT GAAGTTTGGT TTATTATTTG GTATATGATA TATGAGATTT GACTTATATG TATGGTTAAT GGTGTCTTTT GCATTGCTTA TCATTATGTG GGTGTATTAT GCATTCCCCA 
TGCCCATCCA GGAACTCACG GCTTTGTTTT TG 

Retrieve as FASTA