Entry information : SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])
Entry ID 2706
Creation 2006-01-12 (Christophe Dunand)
Last sequence changes 2011-01-27 (Toky Ramarohetra)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])
Name (synonym) SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])
Class Class III peroxidase    [Orthogroup: Prx019]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx89
start..stop
S start..stop
SiPrx58 449 1e-160 7..309 33..329
OsPrx52 389 7e-137 10..311 35..332
MguPrx50 273 3e-91 9..309 22..321
EguPrx48 271 2e-90 9..310 22..319
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 509568..510503 936  
join(509568..510503)


exon

Literature and cross-references SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])
Literature PlantGDB
DNA ref. Phytozome 12:   chromosome_6 (509568..510503)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.4779.1
Protein sequence: SbPrx89 (Sobic.006G003200.1 [2.1] / SB06G000490 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   311
PWM (Da):   %s   33372.3  
PI (pH):   %s   4.51
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAIVVDALD AGYYATTCPD AEAIVEDAMS RLHYTDPTLS PAIIRMLLHD CFVRGCDASV MIVPTPPLHH PATSSERTAV PNHTLRGFTA VDAVKRAVDD ACRGVVSCAD VLALMARDAV  VLLGGARYDV ALGRRDGTVS NPDEVDLPAP FAKLADVLDY FAARGFSAEE TVVLFGAHTV GGAHCSSFRY RLTGGPGDGT MDETLRRDML DECGAEELPL ETDPAVFFDP DSPFAVDNNF 
YRQLMSNRTL LQVDQEAAVN PSTAPHVAYY AANPDAFVRR FSEVMAKLSN VGVLEGDAGE VRKLCSRYND T 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, no intron). Sequencing error: extra G just before the SCA which induce a frame shift. No EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGA TCGTCGTCGA CGCTCTAGAC GCGGGCTACT ACGCAACGAC ATGCCCGGAC GCAGAGGCGA TCGTGGAGGA CGCCATGTCG CGGCTCCACT ACACGGACCC AACCCTATCT  CCGGCCATCA TCCGGATGCT GCTCCACGAC TGCTTCGTCC GCGGCTGCGA CGCCTCCGTC ATGATCGTGC CCACGCCGCC GCTCCACCAC CCGGCGACCT CCTCCGAGCG CACCGCCGTC  CCCAACCACA CGCTCCGCGG CTTCACCGCC GTCGACGCCG TCAAGCGCGC GGTCGACGAC GCGTGCCGCG GCGTGGTGTC CTGCGCCGAC GTGCTGGCGC TCATGGCGCG CGACGCCGTC  GTGCTCCTGG GCGGCGCACG CTACGACGTC GCGCTGGGGC GGCGTGACGG GACGGTTTCG AACCCCGACG AGGTCGACCT GCCCGCGCCG TTCGCGAAGC TCGCCGACGT TCTGGATTAC  TTCGCCGCTA GGGGTTTCTC GGCCGAGGAG ACCGTCGTGC TCTTCGGCGC ACACACCGTC GGCGGCGCGC ACTGCTCCTC GTTCCGGTAC CGTCTCACCG GAGGACCTGG CGACGGTACC  ATGGACGAGA CGCTCCGCCG CGACATGCTC GACGAGTGCG GCGCCGAGGA GCTGCCGCTG GAGACCGACC CGGCCGTGTT CTTCGACCCG GACTCGCCGT TCGCCGTCGA CAACAACTTT  TACAGGCAGC TGATGAGCAA CCGGACGCTG CTGCAGGTGG ATCAGGAGGC CGCCGTCAAC CCCAGCACCG CGCCGCACGT CGCCTACTAC GCCGCCAACC CCGACGCGTT CGTGCGGAGG 
TTCTCTGAGG TCATGGCCAA GCTCAGCAAC GTCGGCGTGC TCGAGGGCGA CGCCGGTGAG GTCAGGAAGC TCTGCTCAAG GTACAACGAC ACTTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGA TCGTCGTCGA CGCTCTAGAC GCGGGCTACT ACGCAACGAC ATGCCCGGAC GCAGAGGCGA TCGTGGAGGA CGCCATGTCG CGGCTCCACT ACACGGACCC AACCCTATCT  CCGGCCATCA TCCGGATGCT GCTCCACGAC TGCTTCGTCC GCGGCTGCGA CGCCTCCGTC ATGATCGTGC CCACGCCGCC GCTCCACCAC CCGGCGACCT CCTCCGAGCG CACCGCCGTC  CCCAACCACA CGCTCCGCGG CTTCACCGCC GTCGACGCCG TCAAGCGCGC GGTCGACGAC GCGTGCCGCG GCGTGGTGTC CTGCGCCGAC GTGCTGGCGC TCATGGCGCG CGACGCCGTC  GTGCTCCTGG GCGGCGCACG CTACGACGTC GCGCTGGGGC GGCGTGACGG GACGGTTTCG AACCCCGACG AGGTCGACCT GCCCGCGCCG TTCGCGAAGC TCGCCGACGT TCTGGATTAC  TTCGCCGCTA GGGGTTTCTC GGCCGAGGAG ACCGTCGTGC TCTTCGGCGC ACACACCGTC GGCGGCGCGC ACTGCTCCTC GTTCCGGTAC CGTCTCACCG GAGGACCTGG CGACGGTACC  ATGGACGAGA CGCTCCGCCG CGACATGCTC GACGAGTGCG GCGCCGAGGA GCTGCCGCTG GAGACCGACC CGGCCGTGTT CTTCGACCCG GACTCGCCGT TCGCCGTCGA CAACAACTTT  TACAGGCAGC TGATGAGCAA CCGGACGCTG CTGCAGGTGG ATCAGGAGGC CGCCGTCAAC CCCAGCACCG CGCCGCACGT CGCCTACTAC GCCGCCAACC CCGACGCGTT CGTGCGGAGG 
TTCTCTGAGG TCATGGCCAA GCTCAGCAAC GTCGGCGTGC TCGAGGGCGA CGCCGGTGAG GTCAGGAAGC TCTGCTCAAG GTACAACGAC ACTTAA 

Retrieve as FASTA