Entry information : SbPrx35 (Sobic.002G391200.1 [2.1] / Sb02g040660 [1.4])
Entry ID 2707
Creation 2008-10-15 (Christophe Dunand)
Last sequence changes 2008-10-15 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx35 (Sobic.002G391200.1 [2.1] / Sb02g040660 [1.4])
Name (synonym) SbPrx35 (Sobic.002G391200.1 [2.1] / Sb02g040660 [1.4])
Class Class III peroxidase    [Orthogroup: Prx081]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx35
start..stop
S start..stop
ZmPrx63 523 0 116..413 52..351
ZmPrx63 47 0.000005 1..30 1..31
ZmPrx68 521 0 113..413 29..332
SiPrx116 441 1e-155 116..416 48..336
ZmPrx08 406 1e-141 97..411 28..349
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 74569953..74571203 1251  
join(74569953..74571203)


exon

Literature and cross-references SbPrx35 (Sobic.002G391200.1 [2.1] / Sb02g040660 [1.4])
Literature Cordonnier-Pratt,M.-M., Suzuki,Y., Sugano,S., Klein,R., Brady,J., Liang,C., Sun,F. and Pratt,L.H. A Sorghum EST database: seedlings treated with gibberellic acid or brassinolide
DNA ref. Phytozome 12:   chromosome_2 (74569953..74571203)
EST ref. GenBank:   CX612394.1 [3' end]
Protein sequence: SbPrx35 (Sobic.002G391200.1 [2.1] / Sb02g040660 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   416 (394)
PWM (Da):   %s   43093.41 (40989.1)  
PI (pH):   %s   6.13 (5.71) Peptide Signal:   %s   cut: 23 range:23-416
Sequence
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Send to Peroxiscan
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MAAKLAVLGT LVVLALLGPV SSQQAGYGYG GGSPTPTPPP AYPPTTSPSP TPSPPPAYPP TSSTPSPPTY SSPSPAPPPP AAYPPTTSPT PSPPTTYPPP TPASPPPPSP ASGPALSVGY  YNDKCPGAEA LVREAVRAAD AGIKAGLVRL FFHDCFVQGC DASVLLKPDN DTNPQPEILG IPNLSLRGLD VIDAAKKALE EKCPGVVSCA DIVAFAGRDA SFFLSGGAIN FTMPAGRYDG  KVSNASDTLP NLPPPFADVA QLKAMFAAKG LDTIDMVALS GAHSIGRSHC SSFSRDRLPP SNTSDMNPAF ATQLKANCTS PSGADNTVAQ DYRTPDQLDN QYYWDVINHK VLFASDAALL 
KSGDTAALVY AAALFQKEWQ DRFGKAMVKM GGVEVKTAAN GEIRQMCGYV NKPYSG 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, no intron) and EST. Very long PS!!!
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCTA AGCTCGCCGT TCTCGGCACC TTAGTAGTGC TCGCGCTGCT CGGTCCTGTG TCGTCCCAAC AAGCCGGCTA CGGCTATGGT GGCGGCAGTC CTACACCTAC GCCGCCACCT  GCTTATCCTC CGACGACGAG CCCGAGCCCG ACCCCGAGTC CACCACCTGC TTATCCTCCG ACGAGCTCGA CTCCGAGTCC GCCTACTTAT TCATCTCCAA GTCCAGCCCC GCCGCCACCT  GCTGCATATC CTCCGACGAC AAGCCCGACG CCGAGCCCGC CTACTACCTA TCCTCCTCCG ACACCTGCTA GCCCACCACC ACCATCACCT GCCTCTGGGC CTGCACTGAG TGTCGGATAC  TACAACGACA AGTGCCCCGG CGCGGAAGCC CTCGTGCGGG AGGCCGTGCG CGCCGCCGAC GCCGGCATCA AAGCAGGGCT TGTCCGTTTG TTCTTCCACG ACTGCTTCGT CCAGGGCTGC  GACGCCTCCG TTCTGCTCAA GCCCGACAAC GACACCAACC CGCAGCCGGA GATACTCGGC ATCCCCAACC TGAGCCTGCG CGGCTTGGAC GTCATCGACG CGGCGAAGAA GGCGCTGGAG  GAGAAATGCC CGGGCGTCGT TTCCTGCGCC GACATCGTCG CCTTCGCCGG CCGCGACGCC AGCTTCTTCC TCAGCGGCGG CGCCATCAAC TTCACCATGC CCGCGGGCCG CTACGACGGG  AAGGTGTCGA ACGCCAGCGA TACCCTCCCT AACCTCCCCC CGCCGTTCGC CGACGTCGCG CAGCTTAAGG CCATGTTCGC CGCCAAGGGG CTCGACACCA TCGACATGGT CGCGCTCTCC  GGCGCGCACA GCATCGGCCG CTCCCACTGC TCGTCCTTCA GCAGGGACCG CCTCCCGCCC AGCAACACCT CCGACATGAA CCCGGCGTTC GCCACACAGC TCAAGGCGAA CTGCACGTCG  CCGTCCGGCG CCGACAACAC GGTGGCGCAG GACTACAGGA CCCCTGACCA GCTGGACAAC CAGTACTACT GGGACGTGAT CAACCACAAG GTGCTCTTCG CGTCGGACGC CGCACTCCTC  AAGTCAGGCG ACACCGCAGC GCTGGTGTAT GCAGCCGCCT TGTTTCAGAA GGAATGGCAG GACAGGTTTG GAAAAGCCAT GGTGAAGATG GGTGGAGTCG AGGTGAAGAC GGCCGCCAAT 
GGTGAGATCA GACAGATGTG TGGCTACGTC AACAAGCCCT ACTCCGGTTG A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCTA AGCTCGCCGT TCTCGGCACC TTAGTAGTGC TCGCGCTGCT CGGTCCTGTG TCGTCCCAAC AAGCCGGCTA CGGCTATGGT GGCGGCAGTC CTACACCTAC GCCGCCACCT  GCTTATCCTC CGACGACGAG CCCGAGCCCG ACCCCGAGTC CACCACCTGC TTATCCTCCG ACGAGCTCGA CTCCGAGTCC GCCTACTTAT TCATCTCCAA GTCCAGCCCC GCCGCCACCT  GCTGCATATC CTCCGACGAC AAGCCCGACG CCGAGCCCGC CTACTACCTA TCCTCCTCCG ACACCTGCTA GCCCACCACC ACCATCACCT GCCTCTGGGC CTGCACTGAG TGTCGGATAC  TACAACGACA AGTGCCCCGG CGCGGAAGCC CTCGTGCGGG AGGCCGTGCG CGCCGCCGAC GCCGGCATCA AAGCAGGGCT TGTCCGTTTG TTCTTCCACG ACTGCTTCGT CCAGGGCTGC  GACGCCTCCG TTCTGCTCAA GCCCGACAAC GACACCAACC CGCAGCCGGA GATACTCGGC ATCCCCAACC TGAGCCTGCG CGGCTTGGAC GTCATCGACG CGGCGAAGAA GGCGCTGGAG  GAGAAATGCC CGGGCGTCGT TTCCTGCGCC GACATCGTCG CCTTCGCCGG CCGCGACGCC AGCTTCTTCC TCAGCGGCGG CGCCATCAAC TTCACCATGC CCGCGGGCCG CTACGACGGG  AAGGTGTCGA ACGCCAGCGA TACCCTCCCT AACCTCCCCC CGCCGTTCGC CGACGTCGCG CAGCTTAAGG CCATGTTCGC CGCCAAGGGG CTCGACACCA TCGACATGGT CGCGCTCTCC  GGCGCGCACA GCATCGGCCG CTCCCACTGC TCGTCCTTCA GCAGGGACCG CCTCCCGCCC AGCAACACCT CCGACATGAA CCCGGCGTTC GCCACACAGC TCAAGGCGAA CTGCACGTCG  CCGTCCGGCG CCGACAACAC GGTGGCGCAG GACTACAGGA CCCCTGACCA GCTGGACAAC CAGTACTACT GGGACGTGAT CAACCACAAG GTGCTCTTCG CGTCGGACGC CGCACTCCTC  AAGTCAGGCG ACACCGCAGC GCTGGTGTAT GCAGCCGCCT TGTTTCAGAA GGAATGGCAG GACAGGTTTG GAAAAGCCAT GGTGAAGATG GGTGGAGTCG AGGTGAAGAC GGCCGCCAAT 
GGTGAGATCA GACAGATGTG TGGCTACGTC AACAAGCCCT ACTCCGGTTG A 

Retrieve as FASTA