Entry information : SbPrx28 (Sobic.002G003700.1[2.1] / SB02G000520[1.4])
Entry ID 2759
Creation 2008-11-16 (Christophe Dunand)
Last sequence changes 2008-11-16 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx28 (Sobic.002G003700.1[2.1] / SB02G000520[1.4])
Name (synonym) SbPrx28 (Sobic.002G003700.1[2.1] / SB02G000520[1.4])
Class Class III peroxidase    [Orthogroup: Prx155]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Pannicles
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx28
start..stop
S start..stop
ZmPrx89 495 4e-178 1..338 1..337
SiPrx84 481 2e-172 12..338 11..332
OsPrx96 429 6e-152 37..338 28..328
BdiPrx36 396 5e-139 35..338 31..333
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 460907..461923 1017  
join(460907..461923)


exon

Literature and cross-references SbPrx28 (Sobic.002G003700.1[2.1] / SB02G000520[1.4])
Literature JGI.
DNA ref. Phytozome 12:   chromosome_2 (460907..461923)
Protein sequence: SbPrx28 (Sobic.002G003700.1[2.1] / SB02G000520[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   338
PWM (Da):   %s   36253.71 Transmb domain:   %s   i13-35o
PI (pH):   %s   4.96
Sequence
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Send to Peroxiscan
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MASSSLSSSF RRLVVLQLAA AAAATLILTL GGVAQAQLQY DYYNSTCPGV EDLVRNALLA KFADDMTLPA SLLRLHFHDC FAAGCDATIM LRSRNGTAQR DADPNATVRG YEAIEEVKAT  VEEQCPLTVS CADIMAMAAR DAVNYTKGPA YQVETGRRDG NVSRKEDAVR SLPPADGNVT VLTQYFAAQN LSMKDMTVLS AAHTIGVAHC SSFSQRLYNY TGAGDQDPSL DTEYANNLTA 
VCGPSRMVSV QPLDPVSLNT FDTGYFQSVY SHRALLASDA ALLNDSFTAP YVTLMATNDS YAPTFFHDFS VSMVKMGRIA VRTGNDGEIR ATCAIYVD 

Retrieve as FASTA  
Remarks Complete sequence from Genomic (chromo 2, no intron). No EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTCCT CCAGCCTGTC GTCGTCGTTC CGGAGGCTGG TGGTGCTCCA GCTCGCGGCA GCGGCGGCGG CGACCCTGAT CCTAACCCTG GGCGGCGTCG CGCAGGCGCA GCTGCAGTAC  GACTACTACA ACTCGACGTG CCCAGGCGTG GAGGACCTGG TGCGCAACGC CCTGCTGGCC AAGTTCGCCG ACGACATGAC GCTCCCAGCG AGCCTCCTCC GGCTGCACTT CCACGACTGC  TTCGCCGCCG GGTGCGACGC CACCATCATG CTCAGGTCGC GCAACGGCAC GGCGCAGCGC GACGCGGACC CGAACGCGAC GGTGCGCGGG TACGAGGCCA TCGAGGAGGT GAAGGCCACG  GTGGAGGAGC AGTGCCCGCT CACGGTGTCC TGCGCCGACA TCATGGCCAT GGCGGCCCGC GACGCCGTGA ACTACACCAA GGGACCGGCG TACCAGGTGG AGACGGGGCG GCGCGACGGC  AACGTCTCCC GGAAGGAGGA CGCGGTGCGG TCCCTTCCCC CCGCCGACGG CAACGTCACC GTGCTCACGC AGTACTTCGC CGCCCAGAAC CTGAGCATGA AGGACATGAC CGTGCTGTCG  GCGGCGCACA CCATCGGCGT CGCGCACTGC TCGTCCTTCT CGCAGCGGCT GTACAACTAC ACCGGCGCCG GCGACCAGGA CCCGTCGCTG GACACGGAGT ACGCCAACAA TCTCACGGCG  GTGTGCGGGC CGTCGAGAAT GGTCAGCGTG CAGCCGCTGG ACCCGGTGTC GCTCAACACC TTCGACACGG GCTACTTCCA GTCCGTGTAC AGCCACCGGG CGCTGCTCGC CTCCGACGCC  GCGCTGCTCA ATGACAGCTT CACGGCGCCC TACGTCACGC TCATGGCCAC CAACGACTCC TACGCCCCGA CCTTCTTCCA CGACTTCAGC GTCTCCATGG TCAAGATGGG AAGGATCGCC 
GTGCGCACCG GCAACGACGG CGAGATCAGG GCCACATGCG CCATCTACGT CGACTGA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTCCT CCAGCCTGTC GTCGTCGTTC CGGAGGCTGG TGGTGCTCCA GCTCGCGGCA GCGGCGGCGG CGACCCTGAT CCTAACCCTG GGCGGCGTCG CGCAGGCGCA GCTGCAGTAC  GACTACTACA ACTCGACGTG CCCAGGCGTG GAGGACCTGG TGCGCAACGC CCTGCTGGCC AAGTTCGCCG ACGACATGAC GCTCCCAGCG AGCCTCCTCC GGCTGCACTT CCACGACTGC  TTCGCCGCCG GGTGCGACGC CACCATCATG CTCAGGTCGC GCAACGGCAC GGCGCAGCGC GACGCGGACC CGAACGCGAC GGTGCGCGGG TACGAGGCCA TCGAGGAGGT GAAGGCCACG  GTGGAGGAGC AGTGCCCGCT CACGGTGTCC TGCGCCGACA TCATGGCCAT GGCGGCCCGC GACGCCGTGA ACTACACCAA GGGACCGGCG TACCAGGTGG AGACGGGGCG GCGCGACGGC  AACGTCTCCC GGAAGGAGGA CGCGGTGCGG TCCCTTCCCC CCGCCGACGG CAACGTCACC GTGCTCACGC AGTACTTCGC CGCCCAGAAC CTGAGCATGA AGGACATGAC CGTGCTGTCG  GCGGCGCACA CCATCGGCGT CGCGCACTGC TCGTCCTTCT CGCAGCGGCT GTACAACTAC ACCGGCGCCG GCGACCAGGA CCCGTCGCTG GACACGGAGT ACGCCAACAA TCTCACGGCG  GTGTGCGGGC CGTCGAGAAT GGTCAGCGTG CAGCCGCTGG ACCCGGTGTC GCTCAACACC TTCGACACGG GCTACTTCCA GTCCGTGTAC AGCCACCGGG CGCTGCTCGC CTCCGACGCC  GCGCTGCTCA ATGACAGCTT CACGGCGCCC TACGTCACGC TCATGGCCAC CAACGACTCC TACGCCCCGA CCTTCTTCCA CGACTTCAGC GTCTCCATGG TCAAGATGGG AAGGATCGCC 
GTGCGCACCG GCAACGACGG CGAGATCAGG GCCACATGCG CCATCTACGT CGACTGA 

Retrieve as FASTA