Entry information : RfCcP02
Entry ID 2820
Creation 2007-02-08 (Christophe Dunand)
Last sequence changes 2015-12-11 (Christophe Dunand)
Sequence status partial
Reviewer Achraf Jemmat
Last annotation changes 2016-01-17 (Achraf Jemmat)
Peroxidase information: RfCcP02
Name RfCcP02
Class Cytochrome C peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Foraminifera Reticulomyxidae Reticulomyxa
Organism Reticulomyxa filosa    [TaxId: 46433 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RfCcP02
start..stop
S start..stop
TthCcP01 319 8e-111 4..244 57..290
GtCcP02 311 2e-107 1..243 79..319
CsubCcP01 310 4e-106 1..243 110..345
PsuCcP02 306 7e-106 1..243 35..275
Literature and cross-references RfCcP02
Literature Unpublished data from Fabien Burki
DNA ref. GenBank:   ASPP01008819.1 (27..422)
Protein sequence: RfCcP02
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   244
PWM (Da):   %s   27426.93  
PI (pH):   %s   9.45
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GSWGPIFVRL AWHASGTYDK KDKTGGSNGA TMRFPLEAKD GANNGLDIAR KRLEQVKAKH PEISYADLWV LASYVAIESM GGPHIEFRGG RKDATDEKAC PPNGRLPDVS KGAQHVRDVF  GRMGLNDQEI VVLVGGGHAL GRCHKDRSNY VGPWTRAPTT ISNEFFRVLF EEEWQQKQKE GEKPWTGPLQ YENKKRKDLM MLPADLTLKS DPEFRKWSEI YYKDNDKFLK DFGAAFKKLT 
ELGF 

Retrieve as FASTA  
Remarks Partial sequence from genomic (scaffold end) and 3 ESTs. 5'end is missing. University Geneva (FB)
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTATTTGT TTATGGAAAG GAGAACCTCT TGAAACAAAC TGATAAAAAA AAAAGGGGGC TTTTTTTATA CGTGAAAATA AAAATAAAAA AGATTCCCAT TGGAAGCCAA AGACGGAGCA  AACAATGGAT TGGACATAGC CCGAAAGAGA TTGGAGCAAG TGAAAGCCAA ACACCCAGAA ATATCATATG CTGACTTATG GGTATTGGCA TCGTATGTGG CCATTGAAAG CATGGGTGGA  CCACACATTG AATTCAGAGG AGGACGCAAA GACGCCACTG ACGAAAAGGC TTGCCCTCCT AATGGACGAT TGCCTGATGC TTCAAAAGGC GCTCAACATG TGCGAGATGT CTTTGGCAGG 
TTAATTTTTT TGAAACCAAC ATTAAAAAAT ACCTAA 

Retrieve as FASTA