Entry information : PtAPx04 (POPTR_0009s13650 / Potri.009G134100)
Entry ID 2875
Creation 2006-04-04 (Felipe Teixeira)
Last sequence changes 2006-04-04 (Felipe Teixeira)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-07 (Qiang Li)
Peroxidase information: PtAPx04 (POPTR_0009s13650 / Potri.009G134100)
Name (synonym) PtAPx04 (POPTR_0009s13650 / Potri.009G134100)
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Peroxisomal
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtAPx04
start..stop
S start..stop
PbAPx05 589 0 1..286 1..286
PtAPx06 521 0 1..285 1..285
PtoAPx01 519 0 1..285 1..285
LsaAPx02 497 1e-180 1..286 1..285
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10837990..10838102 113 N° 2 10837773..10837897 125 N° 3 10837641..10837690 50 N° 4 10836603..10836668 66
N° 5 10836475..10836523 49 N° 6 10834912..10834994 83 N° 7 10834736..10834815 80 N° 8 10834545..10834647 103
N° 9 10833864..10834055 192  
complement(join(10833864..10834055,10834545..10834647,10834736..10834815,1083491 2..10834994,10836475..10836523,10836603..10836668,10837641..10837690,10837773..1 0837897,10837990..10838102))


exon

Literature and cross-references PtAPx04 (POPTR_0009s13650 / Potri.009G134100)
Literature JGI
DNA ref. Phytozome 12:   Chr09 (10838102..10833864)
Cluster/Prediction ref. JGI gene:   557084 UniGene:   Pth.1428
Omic ref. ePlant:   Potri.009G134100
Protein sequence: PtAPx04 (POPTR_0009s13650 / Potri.009G134100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   286
PWM (Da):   %s   31297 Transmb domain:   %s   o257-279i
PI (pH):   %s   7.19
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALPVVDTEYLKEIDKARRDLRALIAYKSCAPLMLRLAWHDAGTYDKNSKTGGANGSIRNEEEYSHGSNSGLKIAIDFEGVKAKHPKITYADLYLAGVVAVEVTGGPTIDFVPGRRDSNICPKEGRLPNAKLGSPHLRDIFYRMGLSDKDIVALSGGHTGRAHPDRSGFEGPWTQEPLKFDNSYFVEMLKGETDGLLKLPTDTALLDDPAFRPYVELYADEEAFFRDYAASHKKLSELGFTQGSSGFKVKDTTVLAQSAAGVAVAAAVVILSYFYEVRKKMK*

Retrieve as FASTA  
Remarks Complete sequence from genomic (8 introns) and ESTs. Unigene contains ESTs from PtAPx04 and PtAPx06.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTTACCGGTCGTTGACACAGAGTACCTGAAAGAGATCGACAAAGCACGTCGCGATCTCCGTGCTCTCATCGCTTACAAAAGCTGCGCTCCTCTCATGCTTCGCTTAGCGTAACTA
ACCAACTAACTAACCACTCATTGTCTTTGTTTGAATCTTTCTGTTTCGATTGATTTTTTATTTTCCGGTTATGGTTTTTTTGAAGGTGGCATGATGCAGGAACGTATGATAAGAACTCGA
AAACAGGAGGAGCTAATGGTTCGATAAGGAATGAAGAAGAGTACTCTCATGGTTCTAATAGTGGCTTGAAAATAGCTATCGATTTTTGCG
GTTAGTTAGTTCCACTGAAATTTAACTCAC
TTGATTTGTTGATTTTTTTTAAATATTTGATTATGATTTTTTAATTTTTTAGAGGGAGTGAAGGCGAAACATCCGAAGATTACTTATGCGGATTTATACCAGGTGATTTTCTTTGATTAA
TTGATGAATTGTATAATTAATGATGCAGATAATTAAATACCTGTTTAATTAATAATAGTATTTTCCATTTTTATGTCTATTTAATATGTTGTTTCACAGATTTGGTAGTTAATAATTAAC
ATTTATCTTGATTTTCTTGTCAAAAAATAACATATGTGGATATGTAACTGAAAAACTTGTGATTATAATGTAAATGAGGTAGCGATTTTTCGTGTGGGTGAGTGGAGAGGTGGAACATGC
ATGGAATATTCCAAGGATCACACACCACACACGCACACGTGTCCAGGAACGCACGCTCATTTTCCTGGGGAATGGAAAAACTAACTATATAGTTTGTGGATAGAGATGCAAGTTCTTAGG
ACGTTACAACCACTGACACGACTAAATCACAAGGCTTGAAGTTTTAAAATGTGTCTGCCTGACCTGTCTAGTCAATCTTCTCAATAATTTTACGTTAATTGCAATGAAATGACGAGTTCT
ATTAATGCAAGTATAGTGTATAGTGTTCCTGTCTCGTTGTCATCCATGTTGGTATCGAGCGCTCACGAATATTGATACCAACGGTGTCCTTTTAATTGATGAATAGGTTTCTAAGTTTTG
CAGGGAAGAATTTGGAGAGATTTTCTTCTAGTATTTTATCCTACCTATATAGGAGGAATTTGTTGATGGATATTGGGAGGTGGACACTATCAGATGTACTATCATGGATTCACGGTTGCA
GCTCTGATCCTTGGCAGGATACCCAACTATATTTGCCAAACTATGAACACACCAGCAAACCTTAAATTCCATGATTGTTACATCAGTCGGTACATTCAGTTCAAAATGAGTGTAGTTGTT
GATATACAATGAGTGGTGGTTTGAATATGAAATATTTGAATATTCTGAGTATAATTGTTGGGTTTCCAAACACAATGAGCAATTTGATTCATAGTCAACAACATTCATGTTCAGCTTGCA
GGTGTTGTTGCAGTGGAGGTCACTGGGGGTCCAACCATTGATTTTGTTCCTGGTAGAAGG
GTATGTGATTGTGGCATTTCTCGGCGATATAGGTGATTATGAGTTCATAACAATGCTGAC
TATATGTCCGATCTCTTAGGATTCAAATATTTGTCCCAAGGAAGGGCGACTTCCAAATGCTAAACTAGGTATTTTCAGTATTTTAATTATTGTGGAAACTTCTTTAATTTAATTCAGGGG
CTGGAAATTCTCAAATCGTTGTTTGCTTTCTTCTAATGTCATAAACTTAGCTAAACCTGATTCAAAGGGAAGGTGAATTTATGTGTTTTGTTGTGTCTTTGTCATTCTGTAAATAAGCCA
TCCATTGCATGTTTACAGTATCAAGAGAACTAATAGTTAAGGGGGTATGCGCTGTACAGGACTGATGCGCAGCAGACTAGTTTCGCTGGCTATAATTATCCATTGAATTTAGCTGTCTTC
AAGTAGTCTTCTCAGTCTATTGAATTTCTATTTCAAAAATCTAGTTTTCCAATTTTTGAGAACTTATGTTCCATGTGGACCTGAAAGTTCTTTCCTTAACGTGGGTATTGTGTTGAACAC
GAGTTGAAATGTTAGCCAGGATTGTAAATTGTTATGGTGTTTGGCTAAGAGGCAGAACCATCACACAAAATGCAAAGCAAGTTCATTTTGGGGACCCAATGCATTTGTTTACTCTAAGCA
TTGCACATGAAGATACATGCTAGATTTTCAGGCAAGATTATTTGTAGGTGAATCACTTATAATTGCTTGTTTGTTGGTTTCAGAACCTTTTGTATGTTCTGTCTCATAAAATTACTCCTA
AATCCATAGAGTTCTACCATTAGTAGGTGGTTTAACGTGGAGGAGTGTCAGGTTCTCGTATCTCAATTCATGCGATGATCTTTACTTGCGTTGGTTCTGCTGATAGAGCAGTCATACTGA
TCTGTTCTTTCATCTCATAACGCGCATATATTCGTGCTGATTTCTGTGTAAGAAATTTGTGTGTAAGTTGTAATTTGCAGGTGTTCTATGACTAAAAAATTGATGTTGTTTGATCTTCGT
ATGGGCTGTTTATTCAGACTTTCAGCATAGGAAGGGGCGAAGCTACACATTAGGGAAGGGGGGCAATTGCACCCCTTAATTTGTCATAATTATCACTTTAGTCCTTATACTTTCAATTTT
GTTTGATATTTTTAAATAAAAATACATTAGTTGCCCAACATAATTTTCCTAATTCTTAACTATGAAACCCCTTTAATTTTTTATACTTCCCACTTTAATCCTTTTACCTTTCAATTTTTC
ATGATAATTTTAAATAAAAATACATTAGTTACCCCCATAATTTTCTTAATTCTTACCTATGAAAACAATTTCCCCACCTTAATAAATACTTCTAGCTTCGCCACTGAGCTTAGGGGAAGC
TAATCGAAGATGAATATTGATGCAGAACTGAGAAGTTTCATGGGGACCATTTCACATTTTAGACAGCTACATATCAATGATTCTTGTTTGTTCTTTGGAATCTGCTCACATTGATCCTTA
GAAGAGTGCCTGTGGGTTGGCTATGCATACCTGTTGAAAGTTCATATGTTTAAATAGGGCACTTTGAAAGGACTTGTATTTTCACTCTTCATTTATGAACCATGGCAGGTTCACCACATT
TGAGGGACATCTTTTATCGGATGGGTCTGTCTGATAAAGATATCGTGGCACTTTCTGGAGGTCATACTCTG
GTAATTCTGTAGAACTGTTTCTGATGTTCTACGTAGATCTGATAAGCCA
CATATGCTCAAATCTGTAATTCTTTTGGCGGATATTGTTCTGTTTAGGGAAGGGCACATCCAGACAGATCCGGTTTTGAAGGGCCCTGGACTCAGGAACCTCTAAAGTTTGATAACTCGT
ATTTTGT
GTAAGTTTTAAAGCAAGCTCAGCATACTACCATTTATCTGTGTAGAGATTATGAAATTAATTAATCTTTCACTCACTGGCGGTACTAGGGAAATGTTGAAAGGGGAGACAGAC
GGGTTATTGAAACTTCCAACAGACACTGCTTTGTTGGATGACCCTGCGTTCCGTCCTTATGTTGAGCTGTATGCTAAG
GTAATGTGGGCTTTTATTTTTACCAAATGACTTGTTGCATGA
ATGGCTCGTCAAAACTTTTCCGATCCCCTTTCAACCTGCTTTGATTTTTCAATGCAGGTTGGGTCTGGATAAAACTATTGGCTCGACCATCTTGAAACCTAGTTTTATGCATTTTATTTT
CCTTTTGATAGATCTTTTTTAAGTGATGGGTAACGGTTCGAAAGTGGTTTTTTTGAACACCAATGAATTACATTGTCCAGGGTTAGTTTGGACCCTAATATATCTTACCCTAAAGTGGGC
TTTCTGGCCCTTTTCAAGCTTCTATTCACCAACTAGCATCCTTATGGTTCTTTGCCCCCCTTGGGATTGGGAATCGCAAGGGTAAATCTATACCTTGGTGTCGTAGTTAGATTCATGGAC
TGTGGGGTGACTTCAACGTGCTTGCTTAACTCTGGGGGTATAATATGATACGTGATTTCTTTTTGTTCAATTTTTATTGTTTCTCAGGACGAAGAAGCATTCTTTAGAGACTACGCGGCT
TCGCATAAGAAGCTTTCAGAACTGGGGTTCACTCAAGGGTCTTCTGGGTTCAAGGTAAAGGATACCACTGTACTGGCACAGAGTGCAGCTGGAGTTGCAGTTGCTGCGGCTGTTGTGATC
CTTAGCTATTTCTACGAAGTTCGCAAGAAAATGAAGTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTTACCGGTCGTTGACACAGAGTACCTGAAAGAGATCGACAAAGCACGTCGCGATCTCCGTGCTCTCATCGCTTACAAAAGCTGCGCTCCTCTCATGCTTCGCTTAGCGTGGCAT
GATGCAGGAACGTATGATAAGAACTCGAAAACAGGAGGAGCTAATGGTTCGATAAGGAATGAAGAAGAGTACTCTCATGGTTCTAATAGTGGCTTGAAAATAGCTATCGATTTTTGCG
AG
GGAGTGAAGGCGAAACATCCGAAGATTACTTATGCGGATTTATACCAG
CTTGCAGGTGTTGTTGCAGTGGAGGTCACTGGGGGTCCAACCATTGATTTTGTTCCTGGTAGAAGGGATTCA
AATATTTGTCCCAAGGAAGGGCGACTTCCAAATGCTAAACTAG
GTTCACCACATTTGAGGGACATCTTTTATCGGATGGGTCTGTCTGATAAAGATATCGTGGCACTTTCTGGAGGTCAT
ACTCTG
GGAAGGGCACATCCAGACAGATCCGGTTTTGAAGGGCCCTGGACTCAGGAACCTCTAAAGTTTGATAACTCGTATTTTGTGGAAATGTTGAAAGGGGAGACAGACGGGTTATTG
AAACTTCCAACAGACACTGCTTTGTTGGATGACCCTGCGTTCCGTCCTTATGTTGAGCTGTATGCTAAG
GACGAAGAAGCATTCTTTAGAGACTACGCGGCTTCGCATAAGAAGCTTTCA
GAACTGGGGTTCACTCAAGGGTCTTCTGGGTTCAAGGTAAAGGATACCACTGTACTGGCACAGAGTGCAGCTGGAGTTGCAGTTGCTGCGGCTGTTGTGATCCTTAGCTATTTCTACGAA
GTTCGCAAGAAAATGAAGTAG

Retrieve as FASTA