Entry information : PtAPx06 (POPTR_0004s18030 / Potri.004G174500)
Entry ID 2877
Creation 2006-04-04 (Felipe Teixeira)
Last sequence changes 2006-04-04 (Felipe Teixeira)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-07 (Qiang Li)
Peroxidase information: PtAPx06 (POPTR_0004s18030 / Potri.004G174500)
Name (synonym) PtAPx06 (POPTR_0004s18030 / Potri.004G174500)
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Peroxisomal
Tissue types Buds
Leaves
Stems
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtAPx06
start..stop
S start..stop
PtoAPx01 581 0 1..286 1..286
PtAPx04 520 0 1..285 1..285
PbAPx05 520 0 1..285 1..285
PtremAPx02 506 0 12..258 1..247
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 19291077..19291189 113 N° 2 19290871..19290995 125 N° 3 19290741..19290790 50 N° 4 19289780..19289845 66
N° 5 19289652..19289700 49 N° 6 19288232..19288314 83 N° 7 19288056..19288135 80 N° 8 19287863..19287965 103
N° 9 19287145..19287336 192  
complement(join(19287145..19287336,19287863..19287965,19288056..19288135,1928823 2..19288314,19289652..19289700,19289780..19289845,19290741..19290790,19290871..1 9290995,19291077..19291189))


exon

Literature and cross-references PtAPx06 (POPTR_0004s18030 / Potri.004G174500)
Literature JGI
DNA ref. Phytozome 12:   Chr04 (19291189..19287145)
Cluster/Prediction ref. JGI gene:   556634 UniGene:   Pth.1428
Omic ref. ePlant:   Potri.004G174500
Protein sequence: PtAPx06 (POPTR_0004s18030 / Potri.004G174500)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   286
PWM (Da):   %s   31418.15 Transmb domain:   %s   o257-279i
PI (pH):   %s   7.18
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MALPVVDTEYLKEIEKARRDLRAVIAYKNCAPIMLRLAWHDAGTYDKNTKTGGANGSIRNEEECSHGSNNGLKIAIDSEEVKVKHPKITYADLYLAGVVAVEVTGGPTIDFVPGRRDSNTCPKEGRLPNAKLGSPHLRDIFYRMGLSDKDIVALSGGHTGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGQTEGLLKLPTDTALLDDPDFRPYVELYADEEAFFRDYAASHKKLSELGFTPRSSVVKVKDSTVLAQSAVGVAVAAAVVILGYFYEVRKKMN*

Retrieve as FASTA  
Remarks Complete sequence from genomic (8 introns) and 1 EST. Unigene contains ESTs from PtAPx04 and PtAPx06
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCTACCGGTTGTTGACACAGAGTACCTGAAAGAGATCGAAAAAGCACGTCGCGATCTCCGTGCTGTCATCGCTTACAAAAACTGCGCTCCTATCATGCTCCGCTTAGCGTAACCA
ACTAACTAGCTTTCTCATTGCTTACTCTCTCTCTCTGTTTGAATCTTTCTGTTTTGATTTTTTTTTCGGTGAAGGTGGCATGATGCAGGAACTTATGACAAGAACACGAAAACAGGAGGT
GCTAATGGTTCGATAAGGAACGAAGAGGAGTGCTCTCATGGTTCTAATAATGGCTTGAAAATCGCTATCGATTCTTGCG
GTTAGTTTCTTACTTGCTTTCCACTTAAATTTCACTTATAT
TTTTGTTGATTTTGATTTTGATTTTTTGAGTTTTTTCAGAGGAAGTGAAGGTGAAACATCCGAAGATTACTTATGCAGATTTGTATCAGGTGATCTGTTTCACTCCAGTAGTGTTTGATT
AAGTAATACTGCAGATAATTAAATAAATGTTTAATTAATACTGTTTATTATTCTCCATCTATATGTCTATTTAATTTGTTGTTTCAGTATTGGTAGCTAATAATTATACTGATAATCAAA
GCCTAAACTGATTTTCTTGTCAAAAAGTAACAGTATGTAGAGATATAATTGAAAAACTTGAGTAAATGAAGTAGCGATTATCCGCGTGGGTGTGTGGCGGAGGTGGAACATTCCTTGGTA
AATCTAACCTTATGATTTGTGGATGGAGATAGAAATTCTAAGGACATTACCGCCACTGACAGGACTGAATCACAAGTGGAAGTTCTAAAAATATGTCTTGTCTGACCTGTCTAGTCAATC
TTCACAAGAAATGTGAGTGAATGGCGATGAAATGATGATTCCTAGTCATGCAAGTATAGCATAAGGTGGTTCCTGTTCTATTTTCTTCCATGTTGGTATTGAATGCTCACAAATATAGAT
ACCTGACGTATTTTTCTAATTCATGATTAGGTTTCTAAATTTTTCGGGGAAGAATTTGGAGAGATATTCTTTTAGTATGTTACCGTAGCAATTCAGTTGGAATTTGTTGAAGCATGCTGG
GAGTTGGGCAACATTAGATGCACTATCATGGTTGCTGTTCTGTTCCTTGGCATGATACACAAAATATTTGCAAAATTATGAACAGACCAGCAAGCCATAACTCCATGATTGCTGCATCAG
TTAGTACATTAAGCTTAACATGCGAGTAATTGATATATAATGAGTGGTGGATTTTAATGTAAAATGTTTGAATATCCAAGTACAATTGCTGGGTTTTAAAATATAAGGAGCAACTGACTC
ATATTCAACTACTTGCATGTTCAGCTAGCAGGCGTTGTTGCAGTCGAGGTCACTGGAGGTCCAACCATTGATTTTGTTCCTGGTAGAAGGGTATGTGATTGAAGCATTTCTTGAAGATGC
AGGTGATTATCAATTTATAACATTGCTGACTATATGTTCATTTTCTTAGGATTCAAATACTTGTCCCAAGGAAGGGCGACTTCCAAATGCCAAACTAGGTATTTTCAGTAGAAACTTCTT
TAGTTTAATTCAGGGGTTGGAAGTTCTTAAATTGTGGTGTGCTTTCTTTTAATGTATGAACTGAGCTAAACCTGGTCTAAAGGGAAAGGTGGAATTATGTGTTTTGGGATTTGTGTCTTT
GTGATGCTGTAAATAAACTTATTTATTGTGTGTTTACAGCATCAATGAATCTAATAGTTGAGGGTATTGTGTTGTATGGGACTGACGTGCAGTAGATTGGAATTATGTGTTTTGGGATTT
GTGTCTTTGTGATGCTGTAAATAAACTCATTTATTGTGTGTTTACAGCATCGATGAATCTAATAGTTGAGGGTATTGTGTTGTATGGGACTGACGTGCAGTAGATTGGATTCTCTAGATA
TAATTTTTCATTGAATTTATCTGTCTTCTAGTAGTCTTCTCAGTAGATTGAATTGCCATTTCAACAATTTAGTTTTCCAGTTTCTGAGAATTCATTTCCACGCGGACCCAAAAGCTCTTT
CCATAACACGTGGTGTTGTATTGAACATCAGGTGAAGTTTTAGTCAGGATTGTAAATTGTTATGGTGTTCAGCTAAGAAGCAGAACTGTGACATAAAATGCAGAGCAAGTTTTTCTTGAT
TTAATGCATTTGTTTACTCTAATAAGCTTTGTGCATGAAATTGACACATGCTAGATTTTAGGCAAGATTATTTGTAGGTGAATCACGTATAATTGCATGTTTGTTAGAAACAGAACTTTT
TGTATGCTAATTCTTCCGCCTTTTCTGTACTAGTTTTTTTTGACTAATTCATTGCATTACATTAGAGTTCTGTCTCATAAAATCACTCCTAAATCCATAGATTTCTACATTTAATAGGTG
GTTTAATGTGGAGGAGAGTCAGGTTGTCGTATCTCAATTCAAGTGATGATCTTTACTTTTGTTGGTTCTGCTCATAGAGCAGCCATGCTGATCTGTCCTTTCATCTCACAACATGCATAT
ATTTGTGCTGATTTCTGTGTAATAATGATTTGTCGAAGTTGTAATTTGCAGCTGTTCTATGACTGTAAAGAATAGTTGTTTGATCTTCACATGGCTGTTTATTTAGACTATCAGCTTAGG
GGAAGTTACTCACAGATGAATATTTATCCAGGGCTTATAAGTTTCATGGAGACCATCTCACATTTTTAGACAGTTCCATATTAATGATCTTTGTTTGTTGTTCTTTGGAATCTGTTACCA
TGAAGTTTTATAAAAGTACCTGTTGGTTGGCCATACGCTGTTGAGCGTTCATATGTTTAAATAGAGCACTTTGAAAGAACTTGTATTTTCATTATTCATTTCTGAAATATGGCAGGTTCA
CCACATTTGAGGGACATCTTTTATCGGATGGGCCTGTCTGATAAAGATATCGTGGCACTTTCTGGAGGTCATACCCTG
GTAATTCTCTAGAACTGTTTCTGACTGTCAATGTAAATCATA
TAAGCCGCAGATGCACAAATTTGTAATTCTTTTGCTGGCTATGATTCTATTTAGGGAAGAGCACATCCAGAGAGATCAGGTTTTGATGGCCCCTGGACTCAGGAACCTCTAAAGTTTGAT
AACTCATACTTTGT
GTAAGTTTTAATGCAAGCTCAGCATACTACCATGTTTCGTTGTGTAGAAATTATGAAATTAATCAATCTTTTACGCACTGTTGATACTAGGGAACTATTGAAAGGG
CAGACAGAGGGGTTGTTGAAACTTCCAACAGACACTGCTTTATTGGATGACCCTGACTTTCGTCCTTATGTTGAGCTGTATGCTAAG
GTAATGTGGGCTTTCGTTTCGACCAAATGACTT
GTTTCATGAATGGGTCATCATAACTTTTCCTATCCCCTTGCAACCTGAGTTGATTTTTCCATGCAGTTTGGGTCTGGAAACTATTGGCTTGACCATCTTGAAACCTGATTTTATGCATTT
TCATTGCCTTTTGATGGTTCCTTTTCAAATGATCCCAAGTATTTTTTTTTGAACAACAATAATTAAATAGTCCGGGGTTAGCTTGGACCATAATCTAATCTTAACCTAAATTGGGCCTTA
TGTGGCCTTTTTCGAGCTTCTGTTAAGGGTTCTTATGGCCTACCTTACGACTGGGAATCGCAAGGGTAAATACATGCCTTGATTTGCACCTCGATCTAGAATCATTAATAAAGAATACCC
ACCGTTCAGATTGGTGTCGCAGTTAGATTCTTAGTGTGGGATGACTTGTGATGTGGTTTATTTCTGTTGCTTCACCTTGGCGATCTAATATGATATCTGATATCTCTTTTCTTCAATTTT
TGTTGCTTCTCAGGATGAAGAAGCATTCTTTAGAGACTACGCTGCCTCGCATAAGAAGCTATCAGAACTGGGGTTCACTCCAAGGTCCTCTGTAGTCAAGGTAAAGGACAGCACTGTACT
AGCACAAAGTGCAGTTGGAGTAGCAGTTGCGGCAGCTGTTGTGATCCTTGGCTATTTTTATGAAGTTCGCAAAAAAATGAATTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGCTACCGGTTGTTGACACAGAGTACCTGAAAGAGATCGAAAAAGCACGTCGCGATCTCCGTGCTGTCATCGCTTACAAAAACTGCGCTCCTATCATGCTCCGCTTAGCGTGGCAT
GATGCAGGAACTTATGACAAGAACACGAAAACAGGAGGTGCTAATGGTTCGATAAGGAACGAAGAGGAGTGCTCTCATGGTTCTAATAATGGCTTGAAAATCGCTATCGATTCTTGCG
AG
GAAGTGAAGGTGAAACATCCGAAGATTACTTATGCAGATTTGTATCAG
CTAGCAGGCGTTGTTGCAGTCGAGGTCACTGGAGGTCCAACCATTGATTTTGTTCCTGGTAGAAGGGATTCA
AATACTTGTCCCAAGGAAGGGCGACTTCCAAATGCCAAACTAG
GTTCACCACATTTGAGGGACATCTTTTATCGGATGGGCCTGTCTGATAAAGATATCGTGGCACTTTCTGGAGGTCAT
ACCCTG
GGAAGAGCACATCCAGAGAGATCAGGTTTTGATGGCCCCTGGACTCAGGAACCTCTAAAGTTTGATAACTCATACTTTGTGGAACTATTGAAAGGGCAGACAGAGGGGTTGTTG
AAACTTCCAACAGACACTGCTTTATTGGATGACCCTGACTTTCGTCCTTATGTTGAGCTGTATGCTAAG
GATGAAGAAGCATTCTTTAGAGACTACGCTGCCTCGCATAAGAAGCTATCA
GAACTGGGGTTCACTCCAAGGTCCTCTGTAGTCAAGGTAAAGGACAGCACTGTACTAGCACAAAGTGCAGTTGGAGTAGCAGTTGCGGCAGCTGTTGTGATCCTTGGCTATTTTTATGAA
GTTCGCAAAAAAATGAATTAG

Retrieve as FASTA