Entry information : PtGPx01 (POPTR_0006s28120)
Entry ID 2889
Creation 2006-03-20 (Felipe Teixeira)
Last sequence changes 2010-07-08 (Marie Brette (Scipio))
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtGPx01 (POPTR_0006s28120)
Name (synonym) PtGPx01 (POPTR_0006s28120)
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtGPx01
start..stop
S start..stop
LuGPx140 360 5e-128 2..232 3..244
LuGPx211 360 5e-128 1..232 18..241
VvGPx01 358 3e-127 1..232 1..246
CsGPx01 356 3e-126 29..232 42..245
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 25928774..25929016 243 N° 2 25929410..25929486 77 N° 3 25929674..25929735 62 N° 4 25930396..25930514 119
N° 5 25930598..25930765 168 N° 6 25930946..25930975 30  
join(25928774..25929016,25929410..25929486,25929674..25929735,25930396..25930514 ,25930598..25930765,25930946..25930975)


exon

Literature and cross-references PtGPx01 (POPTR_0006s28120)
Literature JGI.
DNA ref. Phytozome 11:   scaffold_6 (25928774..25930975)
EST ref. GenBank:   DT480693
Cluster/Prediction ref. UniGene:   Pth.3670
Protein sequence: PtGPx01 (POPTR_0006s28120)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   232
PWM (Da):   %s   25294.12  
PI (pH):   %s   10.02
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASLPFSCSSVPGLKIHPNPTKMASFVISIKSSLGPSKSAFLQRGFSLQSPNLPGFASKARSFGVFARAATEKSVHDFTVKDINGKDVALSKFKGKALLIVNVASKCGLTSSNYSELTHIYEKYKTGFEILAFPCNQFGGQEPGSNPEIKQFACTRYKAEFPIFDVDVNGPSTAPVYQFLKSSAGGFLGDLIKWNFEKFLVDKNGKVVERYQPTTSPFQIEKDIQKLLAA*

Retrieve as FASTA  
Remarks Complete sequence from genomic (4 introns) and 9 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCCTTACCTTTCTCCTGTTCATCCGTACCGGGTTTGAAAATCCATCCAAACCCTACAAAAATGGCTTCCTTTGTCATTTCCATCAAGTCCTCACTTGGGCCTTCCAAATCTGCT
TTTTTGCAACGTGGGTTTTCTTTACAGTCTCCAAATCTTCCTGGGTTTGCCTCTAAAGCCCGGTCCTTTGGTGTTTTTGCTAGAGCTGCTACAGAGAAATCTGTTCATGACTTCACTGTT
AAG
GTAGTAGCTCTTTTGATAAAGCTTTTTGTTTTTTTACAGTACTGGTTCAACTGTTCAGTTTATCACCTTTTTGAGTCATGGAAGCTGGGATTTGTTTTGATTTCTCTTGCTTGATTT
AGGAGTTTGGACTTGATTGTTCATGAGGTTGTTAGGTTTCAACTTAGTAGATGTAAAGATAAATCTTTGCTGTTTGAATTGGTAAAAGTTTTGAACTTGAAATGTTTTTGCACTTCTTGG
ACTGGTAGAGTGCATAAGAATCAAGAGCTATGCACTCTGGAATATAGTTTTTGTGGCTGTAAGATTTGAAGATCCTAGATATTGATTCATAATTAGCCCTGAAAATATGAAGATGTAAAG
TGAGGAATAACCTTTTTTTCCATTTACTTGATGCAGGATATTAATGGGAAGGATGTTGCTCTTAGCAAATTTAAGGGGAAAGCTCTCTTGATTGTTAATGTCGCTTCGAAATGGTACTCT
CTCCTTTGAGAATGCTTTATTCTGTGATCTGATTTGTTCTCTCATAGTTGGTTGATTAGCTTGGTTTGTTACGTGTCTTGTATATGAAGAACATATATTTCGAAGTTGTACCAAATTTTT
ATTTATCTACTTTTTTCACGACACTTGAGATCTTATTGGAAGTTTTTGTTCTGACTCCAGTGGTTTGACATCATCAAATTATTCGGAACTCACACACATATACGAGAAGTACAAAACTCA
AG
GTAAGCTAAATTTTTGTGAGGAAAGCATTTTGATTTTTGGCTTTTTAGTGCCTGCAACCTGATTGTTTTGGAAAGAAGTTCTGCTTTTGTAAGCGTAATACCTTTACGATGAGGCTGT
CGATGGAATTGGTGTGATCTTTCGCTCTATTTGATATGTTCTTGCTTTCTTTTGGCACCCAAAGCCTTCACACATCTAAAACAGGTGGCTCAATTTGTATGTGGGAGTGATAGGGGAGTG
GTATTTGAACTACTATTTGAATAGGGAGTTTGTGCCCGTCTCATGCATGTTATATAGATTTTAATTTCTGCTATCCCTAGTTAATGAGCAATCTAATGTTTTGTCATGCACCTGAAGCTC
TTCTGACATTGTATTCGTGTGGTGTCCTGCAACTAGTGGACATTGAAAATCTCCAGGATCATAGCAGGCTTCTATCTTTGTTAAGATTGTAAGAGTAACAATATTGTCAGATCAATAAAT
TTACGGACACCATATCAATATAATGAAGAGAACATCCCTGGGGATATTTCGATATCCACACCATTAAGTAGCATATTTGCATCATCTATTTACTTGATTTGAGAAATTTAAAGCAATAGT
GAAAAGATCTCTCTTTCATTAAATTGATGAAGCTAATCTCTATTATGTAACTTTCATTGCAGGCTTCGAAATTCTGGCTTTTCCTTGCAATCAGTTTGGTGGGCAAGAACCTGGATCAAA
CCCTGAGATTAAACAATTTGCTTGTACCAGGTACAAAGCAGAATTTCCAATATTTGATAAG
GTAAGCGGAATTATTCTCTCCTATTTTTGTAAAATGTCTCTTGGAAAAAGAACAATTTA
ATTACTCAAGGTGTTGCATGACAGGTTGATGTGAATGGACCAAGTACAGCTCCAGTCTACCAGTTTCTGAAATCAAGTGCTGGAGGATTTTTAGGTGATTTGATCAAGTGGAACTTTGAG
AAGTTCTTGGTGGACAAGAATGGCAAGGTTGTGGAGAGATATCAACCAACAACATCACCTTTCCAAATCGAG
GTACACTTCTCTTCTCTTTTCAAGCATTTGGATGTTCTTTGAATTCTT
CTATGCGCCATGACTGATAGGAAGTGGCAACATCTGCTCTTATAAACCATGCCACCTGCATACCAATCCTGTCTTCACATTTCAAGTATCAACCAGCTTTCTTAAAAAATTTCTTCTCTT
TTCCTGTTACAGAAGGACATTCAGAAGCTCCTCGCGGCATGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCCTTACCTTTCTCCTGTTCATCCGTACCGGGTTTGAAAATCCATCCAAACCCTACAAAAATGGCTTCCTTTGTCATTTCCATCAAGTCCTCACTTGGGCCTTCCAAATCTGCT
TTTTTGCAACGTGGGTTTTCTTTACAGTCTCCAAATCTTCCTGGGTTTGCCTCTAAAGCCCGGTCCTTTGGTGTTTTTGCTAGAGCTGCTACAGAGAAATCTGTTCATGACTTCACTGTT
AAG
GATATTAATGGGAAGGATGTTGCTCTTAGCAAATTTAAGGGGAAAGCTCTCTTGATTGTTAATGTCGCTTCGAAATGTGGTTTGACATCATCAAATTATTCGGAACTCACACACATA
TACGAGAAGTACAAAACTCAAG
GCTTCGAAATTCTGGCTTTTCCTTGCAATCAGTTTGGTGGGCAAGAACCTGGATCAAACCCTGAGATTAAACAATTTGCTTGTACCAGGTACAAAGCA
GAATTTCCAATATTTGATAAG
GTTGATGTGAATGGACCAAGTACAGCTCCAGTCTACCAGTTTCTGAAATCAAGTGCTGGAGGATTTTTAGGTGATTTGATCAAGTGGAACTTTGAGAAG
TTCTTGGTGGACAAGAATGGCAAGGTTGTGGAGAGATATCAACCAACAACATCACCTTTCCAAATCGAG
AAGGACATTCAGAAGCTCCTCGCGGCATGA

Retrieve as FASTA