Entry information : RsGPx03
Entry ID 2898
Creation 2006-03-21 (Marcia Pinheiro Margis)
Last sequence changes 2006-03-21 (Marcia Pinheiro Margis)
Sequence status complete
Reviewer reviewer name not stored
Last annotation changes 2008-05-06 (Christophe Dunand)
Peroxidase information: RsGPx03
Name RsGPx03
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Raphanus
Organism Raphanus sativus (Chinese radish)    [TaxId: 3726 ]
Cellular localisation Mitochondria
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RsGPx03
start..stop
S start..stop
BnGPx03_other 355 2e-127 1..197 1..197
BoGPx03_other 338 2e-120 1..187 1..187
AlyGPx03 325 2e-115 4..197 14..206
AtGPx03 320 3e-113 1..197 1..206
Literature and cross-references RsGPx03
Literature Yang X.D., Li W.J., Liu J.Y.;
"Isolation and characterization of a novel PHGPx gene in Raphanus sativus.";
Biochim. Biophys. Acta 1728:199-205(2005).
Protein ref. UniProtKB:   Q8W2D1
DNA ref. GenBank:   AY919316
mRNA ref. GenBank:   AF322903
Protein sequence: RsGPx03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa): %sProtein length in amino acid 197
PWM (Da): %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
22006.6 Transmb domain: %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i7-26o
PI (pH): %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
9.01
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MPRSRSRVLI LLLPLAFVFY LYRYLPSPAI VDQSSYSSIY HISVKDIDGN DVSLSKFTGK VLLIVNVASK CGLTQGNYKE LNILYAKYKT KGLEILAFPC NQFGSQEPGS NKEIKDNICT 
TFKGEFPIFD KIEVNGENAS PLYKFLKEQK GGLFGDSIKW NFAKFLVDKQ GNVVDRFAPT TSPLEIEKDI EKLLAST 

Retrieve as FASTA  
Remarks Complete sequence from genomic (6 introns) and from one cDNA.