Entry information : CiPrx04
Entry ID 2901
Creation 2010-04-30 (Christophe Dunand)
Last sequence changes 2010-04-30 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2010-04-30 (Christophe Dunand)
Peroxidase information: CiPrx04
Name CiPrx04
Class Class III peroxidase     [Orthogroup: Prx008]*
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Cichorium
Organism Cichorium intybus (chicory)    [TaxId: 13427 ]
Cellular localisation N/D
Tissue type Somatic embryos
Inducer Embryogenesis
Repressor N/D
Best BLASTp hits
Perox score E-value CiPrx04
start..stop
S start..stop
LperPrx33 535 0 1..267 55..321
HaPrx18 506 0 1..267 59..325
CanPrx18 461 3e-166 1..267 58..324
NtPrx11-1A 458 9e-165 1..267 55..321
Literature and cross-references CiPrx04
Literature Legrand,S., Hendriks,T., Hilbert,J.L. and Quillet,M.C. Identification of differentially expressed genes during somatic embryogenesis in Cichorium intybus, Unpublished (2005)
EST ref. GenBank:   EH692474.1 [3' end]   DT212598.1 [Fragment]
Protein sequence: CiPrx04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   267
PWM (Da):   %s   28456.09  
PI (pH):   %s   9.37
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
RMGAxLLRLH FHDCFVNGCD GSILLDDTSS FTGEKRAAPN FRSARGFEVV DNIKSAVEKA CPGVVSCADI LAITARDSVA ILGGPSWNVK LGRRDSRTAS QAAANSSIPP PTSSLSQLIS  SFNRAGLSAK DMVALSGSHT IGQARCTNFR ARIYNETNNL DASFATSRRS NCPRATGSGD DNLAPLDIQS PTAFNNDYYK NLINQRGLLH SDQQLFNGGS ADSTVRQYNS NPRLFSSDFA 
AAMIKMGDNK PLTGSSGEIR KNCRRTN 

Retrieve as FASTA  
Remarks Partial sequence from 4 ESTs. PS is missing.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CGGGTCATGA TTGCTTTGTT ATGGATGTGA CGGCTCAATC CTTCTAGATG ATACATCCTC TTTCACCGGT GAAAAGAGGG CAGCTCCTAA CTTTCGATCA GCTAGAGGGT TCGAAGTGGT  GGACAATATA AAATCAGCCG TCGAAAAAGC ATGTCCTGGT GTGGTCTCGT GTGCTGATAT ATTAGCTATT ACCGCTAGAG ACTCTGTTGC AATCCTTGGA GGACCTAGTT GGAATGTGAA  GTTGGGAAGA CGCGACTCAA GAACCGCAAG CCAAGCTGCA GCCAACAGCA GCATTCCTCC GCCCACATCG AGCCTAAGCC AACTCATCTC TTCCTTTAAC AGAGCCGGTC TTTCAGCTAA  GGACATGGTG GCTCTCTCAG GATCCCACAC GATCGGGCAG GCAAGGTGCA CCAATTTCCG AGCCCGGATC TATAACGAGA CCAACAATTT GGATGCGTCA TTTGCCACAT CAAGGCGGAG  CAACTGCCCA AGAGCTACCG GCTCCGGCGA CGACAATTTG GCCCCACTTG ATATCCAATC TCCGACGGCC TTCAACAACG ACTACTACAA GAACTTAATC AACCAAAGGG GACTGCTCCA  CTCGGATCAA CAGCTCTTCA ACGGAGGCTC CGCCGATTCT ACCGTCAGAC AATACAACAG CAACCCCCGT CTATTTAGCT CTGATTTTGC TGCCGCCATG ATCAAGATGG GTGATAACAA  GCCACTAACT GGATCCAGTG GAGAGATCAG GAAGAACTGC AGGAGGACCA ATTAAGAATT TTAATAAAAG TTGGTGTTTT TTTATGGGTA ATCTCGAGAT TTAAAAAAGA AATGGTGTGG 

Retrieve as FASTA