Entry information : CiAPx01
Entry ID 2904
Creation 2006-08-12 (Christophe Dunand)
Last sequence changes 2006-08-12 (Christophe Dunand)
Sequence status partial
Reviewer Filippo Passardi
Last annotation changes 2010-04-21 (Christophe Dunand)
Peroxidase information: CiAPx01
Name CiAPx01
Class Ascorbate peroxidase     [Orthogroup: APx002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Cichorium
Organism Cichorium intybus (chicory)    [TaxId: 13427 ]
Cellular localisation Stromal
Tissue type Somatic embryos
Inducer Embryogenesis
Repressor N/D
Best BLASTp hits
Perox score E-value CiAPx01
start..stop
S start..stop
LsaAPx03 312 1e-107 1..160 207..366
GmAPx07 289 2e-98 1..159 210..368
HarAPx04 278 3e-98 6..157 2..153
SpolAPx02 288 4e-98 1..160 212..371
Literature and cross-references CiAPx01
Literature Legrand,S., Hendriks,T., Hilbert,J.L. and Quillet,M.C. Identification of differentially expressed genes during somatic embryogenesis in Cichorium intybus, Unpublished (2005)
EST ref. GenBank:   DT211527 [3' end]
Protein sequence: CiAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   160
PWM (Da):   %s   17280.58  
PI (pH):   %s   4.59
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
PxPxxEEGRL PDAGPPSPAS HLRDVFYRMG LNDKEIVALS GAHTLGRSRP ERSGWGKPET KYTKEGPGAP GGQSWTVKWL KFDNSYFKDI KEKIDEDLLV LPTDAALFDD PSFKVFAEKY 
AEDEKAFFDD YAEAHAKLSN LGAKFDPIEG FSINDEPAAA 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. 5' end is missing.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACCTGAnCCC nTTnAAGAAG AAGGAAGACT CCCAGATGCG GGCCCTCCTT CACCGGCTTC TCACTTGCGT GATGTCTTCT ACCGAATGGG ATTAAATGAT AAGGAAATAG TTGCATTATC  CGGGGCCCAC ACTTTGGGTA GGTCCAGACC TGAACGCAGT GGCTGGGGAA AGCCAGAGAC TAAATATACT AAAGAAGGGC CCGGAGCTCC AGGGGGGCAA TCTTGGACAG TAAAGTGGCT  AAAGTTTGAT AATTCATACT TCAAGGATAT TAAAGAAAAA ATAGATGAAG ATCTACTGGT TTTGCCTACA GATGCTGCCC TTTTTGATGA TCCGTCATTT AAGGTATTTG CTGAGAAATA  TGCAGAAGAT GAAAAAGCAT TTTTTGATGA TTATGCTGAA GCACATGCTA AACTCAGTAA CCTTGGAGCT AAGTTTGATC CTATCGAGGG CTTTTCAATT AATGATGAAC CTGCAGCTGC 
AGT 

Retrieve as FASTA