Entry information : ZmGPx01-2
Entry ID 2967
Creation 2007-08-16 (Christophe Dunand)
Last sequence changes 2007-08-16 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-23 (Marie Brette (Scipio))
Peroxidase information: ZmGPx01-2
Name ZmGPx01-2
Class Plant glutathione peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Zea
Organism Zea mays    [TaxId: 4577 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ZmGPx01-2
start..stop
S start..stop
SpGPx01 333 1e-119 1..168 1..168
SbGPx01 333 1e-119 1..168 1..168
SiGPx01 330 3e-118 1..168 1..168
ZmGPx01 327 3e-117 1..168 1..168
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 138608704..138608751 48 N° 2 138608294..138608370 77 N° 3 138608078..138608139 62 N° 4 138607784..138607902 119
N° 5 138607325..138607492 168 N° 6 138607197..138607229 33  
complement(join(138607197..138607229,138607325..138607492,138607784..138607902,1 38608078..138608139,138608294..138608370,138608704..138608751))


exon

Literature and cross-references ZmGPx01-2
Literature REFERENCE 1 Lai J., Ma J., Swigonova Z., Ramakrishna W., Linton E., Llaca V., Tanyolac B., Park Y.J., Jeong O.Y., Bennetzen J.L., Messing J. Gene loss and movement in the maize genome. Genome Res. 14:1924-1931(2004).
REFERENCE 2 Swigonova Z., Bennetzen J.L., Messing J. Structure and evolution of the r/b chromosomal regions in rice, maize, and sorghum. Genetics 169:891-906(2005).
REFERENCE 3 Swigonova Z., Lai J., Ma J., Ramakrishna W., Llaca V., Bennetzen J.L., Messing J. Close split of sorghum and maize genome progenitors. Genome Res. 14:1916-1923(2004).
Protein ref. GenPept:   AAS82602 UniProtKB:   B6SU31   Q7FS88 [Incorrect splicing]
DNA ref. GenBank:   AF466202 (213222..214776)
mRNA ref. GenBank:   EU956246
Cluster/Prediction ref. UniGene:   Zm.94084
Protein sequence: ZmGPx01-2
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   168
PWM (Da):   %s   18359.28  
PI (pH):   %s   8.44
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAASSATSVHDFTVKDSSGKDVDLSVYRGKVLLIVNVASQCGLTNSNYTQQAQLYEKYKNGFEILAFPCNQFGGQEPGTNEEIAQFACTRFKADYPIFDVDVNGNNAAPIYKFLKSSKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 10, 5 introns). Incorrect splicing prediction (extra sequence LFLIHCSC). Very similar to ZmGPx01.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCGCGTCGTCCGCCACCTCCGTCCACGACTTCACCGTCAAGGTCAGTCCCTCCCGTCCCCCCTCGGTCGCCCTCTCAACCAAGAACTTCTCTGGGCGTAGATTCCATATATAT
AGGAGATAGGATGACCCCGTAATATTTCGCATGGAGCGCTTGCTTAGTCAGCGTGCACCGGAGCCGCAAGTTCGAGCCTGCTGTGCTTTTAATCCGGGCTTCCAGTGGTTCCTGATTCGT
GCGTGTGAATTTCGCTGTCGATCCGGTTCATTGGCTTGCGAAATGACTGAAATTGCGAACCATTAGCTAGCTGTTCTGCCGAGTTTTTAGAAGAGCAATACATGCCACATCCTCTGATCC
TTGCTGTTCGTATGTATGCAGGATTCGAGCGGCAAGGACGTTGACCTCAGCGTCTACAGGGGGAAGGTTCTTCTCATCGTTAACGTCGCATCCCAATGGTATGAGCCATTTGTCCCTCCT
TGATATAGAATATTAGTTTTTATCTGTGCTACTTATTTCACCGTCAGAGACATAGACATCTTTTGTTTACGCTGGATAGAAAACATTATTGCTGTACACTGCTAATCGCTGCACTGTTTT
CGATTGTTTCAGTGGCTTAACCAACTCCAACTACACTCAGCAGGCCCAGCTCTATGAGAAGTACAAGAACCAAGGCTTGTTCTTGATTCATTGCTCTTGTATATTCTTAGGGTTGTAGTG
CTTATCTGGCCTTATGCAATATTGGCTTATCTTTATCCAACTATCGGTTGTTCACCAATTTAAACAATTCCAGTTGTTGGGGATGCTAATTGCTAAGTATAATTGTCAATTTGTGATATA
TATATGCAGGCTTTGAAATCCTCGCTTTCCCGTGCAACCAGTTTGGTGGGCAGGAGCCTGGTACCAACGAGGAGATTGCCCAGTTTGCCTGCACACGCTTCAAGGCTGACTACCCCATCT
TTGACAAG
GTAACGGTTTTTCCTCAACCAGAGGTCCAGAGCTATCTCAGTGCAAATATACAGTTATCTAACTTAGCAGGATGATGTGAGGATGATATCACTGATGGTCCTAACTCCTAAG
AGCTTGTTTGGTTAGGGGTGGATTGAAAGAAATTGGAGAGGATTAAATCTCCTTCTAGTCAAAATTGAATAGAAGGGGTTTTAATCCCCCTCAACCCCCTCCGATCCCTGTCAAACCGAA
CAAGGCCTGAGGGTAGAATGGTCAGTTGTGGGGTAGTACTGACCTCTATCTCTTATCAGGTTGATGTCAATGGTAACAATGCTGCGCCCATCTACAAGTTTCTGAAATCTAGCAAGGGTG
GCCTTTTCGGCGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTTGACAAGGAGGGGCGTGTTGTGGATCGCTATGCTCCAACCACTTCACCTCTGAGCATTGAG
GTAAACTGCCAGC
GCTGCAATTCACATTTGCTATAAGCGCTTAACTAGTATGCTATTGTCATCGTTATAACGTTTTTTTAATATAATCTCTGTAGAAGGATATCAAGAAGCTGCTTGGGAGCTCTTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCGCGTCGTCCGCCACCTCCGTCCACGACTTCACCGTCAAGGATTCGAGCGGCAAGGACGTTGACCTCAGCGTCTACAGGGGGAAGGTTCTTCTCATCGTTAACGTCGCATCC
CAATG
TGGCTTAACCAACTCCAACTACACTCAGCAGGCCCAGCTCTATGAGAAGTACAAGAACCAAGGCTTTGAAATCCTCGCTTTCCCGTGCAACCAGTTTGGTGGGCAGGAGCCTGGT
ACCAACGAGGAGATTGCCCAGTTTGCCTGCACACGCTTCAAGGCTGACTACCCCATCTTTGACAAG
GTTGATGTCAATGGTAACAATGCTGCGCCCATCTACAAGTTTCTGAAATCTAGC
AAGGGTGGCCTTTTCGGCGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTTGACAAGGAGGGGCGTGTTGTGGATCGCTATGCTCCAACCACTTCACCTCTGAGCATTGAG
AAGGAT
ATCAAGAAGCTGCTTGGGAGCTCTTAA

Retrieve as FASTA