Entry information : BoPrx29_other
Entry ID 3022
Creation 2006-05-05 (Christophe Dunand)
Last sequence changes 2006-05-05 (Christophe Dunand)
Sequence status partial
Reviewer Filippo Passardi
Last annotation changes 2009-08-06 (Christophe Dunand)
Peroxidase information: BoPrx29_other
Name BoPrx29_other
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx29_other
start..stop
S start..stop
BrPrx29-1Aa_other 513 0 1..256 82..337
TsPrx29 478 2e-172 1..255 84..339
AhalPrx23 474 2e-171 1..256 84..339
AlyPrx29 474 6e-171 1..256 84..339
Literature and cross-references BoPrx29_other
Literature Delehaunty,K., Fewell,G., Fulton,L., McCombie,W.R., Miner,T., Nash ,W., Rabinowicz,P.D. and Wilson,R.K. Whole genome shotgun reads from Brassica oleracea, Unpublished (2002)
DNA ref. GenBank:   BZ044382
Protein sequence: BoPrx29_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   256
PWM (Da):   %s   27459.7  
PI (pH):   %s   4.44
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GCDASILIEP SGDQQFTELD SAKNFGIRKR ELIGSIKTSL EVECPQQVSC SDLIILVARE AVALTGGPLI AVPLGRKDSL STPSKHVADS ELPPSTADVD SILNLFAGID MTIEESVAIM  GSHSIGVTHC NNVLSRFDNE NATNANMDPR FQTFLRVVCP EFSPTSKTAE ATFVPNDQTS LIFDTAYYDD SIAGRGNLRI DSEIGVDPRT RPFVEAFAAD QDRFFGSFSS AFVKLSSYKV 
LTGNNGVVRG VCDKVD 

Retrieve as FASTA  
Remarks Partial sequence from 4 GSS: BH518737, BH457226 (447 nt of intron 1)BZ044382, BH537818 (overlap of the intron 3), no intron 2. First exon is missing. No EST.