Entry information : BrPrx03-1Ac_other (Bra032474)
Entry ID 3048
Creation 2009-08-06 (Christophe Dunand)
Last sequence changes 2012-07-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-23 (Christophe Dunand)
Peroxidase information: BrPrx03-1Ac_other (Bra032474)
Name (synonym) BrPrx03-1Ac_other (Bra032474)
Class Class III peroxidase    [Orthogroup: Prx009]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx03-1Ac_other
start..stop
S start..stop
CagraPrx16 638 0 1..326 1..326
BrPrx03-1Aa_other 638 0 1..326 1..326
AhalPrx58 636 0 1..326 1..326
CbPrx01 635 0 1..326 1..326
Literature and cross-references BrPrx03-1Ac_other (Bra032474)
Literature Yang,T.J., Kwon,S.J., Kim,J.A, Kim,J.S., Lim,K.B., Jin,M., Park ,J.Y., Lim,M.H., Kim,H.I., Choi,B.S., Seol,Y.J., Park,D.S., Hahn ,J.H. and Park,B.S. End sequence of Brassica rapa BamHI (KBrB) BAC clone, Unpublished (2005)
DNA ref. GenBank:   ED516227.1 [5' end]   DX046736 [3' end]
Protein sequence: BrPrx03-1Ac_other (Bra032474)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (302)
PWM (Da):   %s   34658.56 (32176.2) Transmb domain:   %s   i7-24o
PI (pH):   %s   8.49 (8.40) Peptide Signal:   %s   cut: 25 range:25-326
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MNCLKTIALS LSLFLVGLVG PIQAQLQMNF YANTCPNAEK IVQDFVSNHI SNAPSLAAAL LRMHFHDCFV RGCDGSVLIN STSGNAERDA TPNLTVRGFG FIEAIKTVLE AQCPGIVSCA  DIIALASRDA VVFTGGPSWS VPTGRRDGRI SNASEALANI PPPTSNFTNL QTLFANQGLD LKDLVLLSGA HTIGVSHCSS FTNRLYNFTG RGDQDPALDS QYAANLKSRK CPSLNDNTTI 
VExxxGSRKT FDLSYYQLVL KRRGLFQSDS ALTTNPTTLS NINQLLKGSV ESFFSEFAKS MEKMGRINVK TGSAGVVRRQ CSVANS 

Retrieve as FASTA  
Remarks complete sequence from genomic (3 introns) and GSS (Brassica rapa subsp. pekinensis: DX014539, DX055982, DX023019, DX065502, X055449, DX046736 and DX054147). No EST. incorrect prediction from Phytozome: exon 2 is partial due to a frame shift => extra intron a between GFIEA and IKTV.