Entry information : BrPrx47-1Aa_other (Bra011438)
Entry ID 3068
Creation 2006-12-26 (Christophe Dunand)
Last sequence changes 2006-12-26 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-07-24 (Christophe Dunand)
Peroxidase information: BrPrx47-1Aa_other (Bra011438)
Name (synonym) BrPrx47-1Aa_other (Bra011438)
Class Class III peroxidase    [Orthogroup: Prx026]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue types Leaves
Roots
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx47-1Aa_other
start..stop
S start..stop
TsPrx47 575 0 1..314 13..326
AruPrx47 572 0 1..314 1..314
BrPrx47-1Ac_other 571 0 1..314 6..319
AlyPrx47 570 0 1..314 12..325
Literature and cross-references BrPrx47-1Aa_other (Bra011438)
Literature Gao,R.J., Dai,D.P. and Ma,R.C. Expressed sequence tags of heading leaf during the heading process of Chinese cabbage Unpublished (2003)
DNA ref. GenBank:   AC189637 (38664..40292)
EST ref. GenBank:   EX109507.1 [5' end]   CA991966 [3' end]
Cluster/Prediction ref. UniGene:   Bra.3662
Protein sequence: BrPrx47-1Aa_other (Bra011438)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   314 (289)
PWM (Da):   %s   34457.86 (31699.3)  
PI (pH):   %s   6.5 (5.36) Peptide Signal:   %s   cut: 26 range:26-314
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVSVNLLRVI MLVHAIIGLP YNVRGLSMGY YMMSCPMAEQ IVQNSVDNAL RADPTLAAGL IRMLFHDCFI EGCDASILLD STKDNTAEKD SPANLSLRGY EIVDDAKAEI ENTCPGVVSC  ADIIAMAARD AVFWAGGPYY QIANGRFDGK RSKIEDTRNL PSPFLNASQL IQTFGQRGFS VRDVVALSGA HTLGVARCSS FKDRLTTPDS TMDSSFAKTL SRTCSAGDNT EQPFDATRND 
FDNAYFNALQ RKSGVLFSDQ TLFNSPMTRN LVNGYAFNQA MFFFHFQQAM QKMSNLNVKI GSQGEVRQNC RSLN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 4 ESTs. Cultivar="Inbred line 'Chiifu'". Incorrect prediction from Phytozome: short PS is missing.