Entry information : BrPrx70-1Ab_other (Bra031934)
Entry ID 3078
Creation 2008-11-07 (Christophe Dunand)
Last sequence changes 2012-07-20 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-20 (Christophe Dunand)
Peroxidase information: BrPrx70-1Ab_other (Bra031934)
Name (synonym) BrPrx70-1Ab_other (Bra031934)
Class Class III peroxidase    [Orthogroup: Prx061]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue types Roots
Whole plant
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx70-1Ab_other
start..stop
S start..stop
ThPrx69 588 0 1..333 1..333
TsPrx69 588 0 1..333 1..333
BstrPrx15 556 0 1..333 1..333
CagraPrx72 553 0 1..333 1..331
Literature and cross-references BrPrx70-1Ab_other (Bra031934)
Literature Ryu,S.H., Kang,J.S., Yang,K.A. and Lim,C.O. Expressed Sequence Tags of Chinese cabbage Roots, Unpublished (2004)
DNA ref. GenBank:   AC234762.1 (73871..72331)
EST ref. GenBank:   EX107729 [5' end]   CV433656 [3' end]
Cluster/Prediction ref. UniGene:   Bra.5270
Protein sequence: BrPrx70-1Ab_other (Bra031934)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   334 (310)
PWM (Da):   %s   35639.37 (33078.9) Transmb domain:   %s   i7-24o
PI (pH):   %s   8.98 (8.79) Peptide Signal:   %s   cut: 24 range:24-333
Sequence
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Send to Peroxiscan
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MGRGYNLLFI LVTFLVLIAA VAAQGNSGSS RRVGQRPRVG FYGNGCRNVE SIVASVVRKH VQSNPANAPG ILRMHFHDCF VRGCDGSVLL AGNKTERTAG PNRSLRGFEA IEEAKTRLEA  ECPGMVSCAD ILTLAAREAV VLTGGQGWRV PLGRLDGRIS QASDVILPGP NDAVDKQKRD FAAKTLNTLD LVTLVGGHTI GTAGCGLVRG RFFNFNGTGQ PDPSIDPSFV PLVQASCPQT 
GDASARVDLD EGSAGSFDTS FLSKVRSSRV VLQSDLVLWN DTETRAIIER FLGLRRPPLR FGTEFGNSMV KMSLIEVKTG SDGEIRRVCS AIN* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 2 and 3) and 2 ESTs (Brassica rapa subsp. pekinensis).
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGTCGTG GTTATAATCT ACTATTCATT CTAGTAACGT TTTTAGTATT GATTGCAGCA GTAGCTGCAC AAGGAAACAG TGGCTCGAGC CGTCGTGTTG GTCAGAGACC GCGTGTCGGG  TTCTATGGAA ATGGATGCCG AAACGTTGAG TCCATTGTGG CATCGGTGGT TCGCAAACAT GTCCAGTCTA ACCCGGCTAA TGCACCCGGG ATTTTGCGTA TGCATTTTCA CGATTGCTTT  GTCCGTGGCT GCGATGGTTC GGTTCTTCTC GCTGGTAACA AAACGGAGAG AACCGCTGGT CCAAACCGTT CATTGAGAGG GTTTGAAGCT ATTGAAGAGG CTAAGACTAG GCTTGAGGCT  GAGTGTCCTG GAATGGTTTC TTGTGCTGAT ATCCTTACCC TTGCTGCTCG TGAGGCCGTT GTTTTGACTG GTGGACAAGG CTGGCGAGTG CCATTGGGAC GTCTAGACGG CCGAATTTCG  CAAGCCTCGG ACGTGATCTT ACCCGGACCA AACGATGCCG TGGACAAGCA GAAGCGAGAC TTTGCTGCTA AAACTCTCAA CACGCTAGAT CTCGTAACCC TTGTTGGCGG GCACACAATA  GGAACAGCTG GTTGCGGTTT GGTAAGAGGC AGATTCTTCA ACTTCAACGG CACAGGACAA CCCGACCCAT CAATCGATCC AAGTTTTGTA CCATTGGTTC AGGCTAGTTG CCCTCAAACC  GGAGACGCAT CAGCCCGAGT CGACTTAGAC GAAGGTAGCG CTGGCAGCTT TGACACATCG TTCCTAAGTA AAGTGAGGTC AAGCCGCGTG GTTCTCCAAT CCGATCTCGT CTTGTGGAAT  GACACCGAGA CTCGAGCCAT CATAGAACGC TTCTTAGGCT TACGCCGACC ACCCTTGAGG TTCGGAACAG AGTTCGGGAA CTCGATGGTC AAGATGAGTC TTATAGAAGT TAAGACAGGA 
TCAGATGGGG AGATTCGTAG GGTTTGCTCT GCGATCAACT AA 

Retrieve as FASTA