Entry information : PtPrx40 (POPTR_0013s15050 / Potri.013G154400)
Entry ID 3118
Creation 2009-01-28 (Christophe Dunand)
Last sequence changes 2010-06-22 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx40 (POPTR_0013s15050 / Potri.013G154400)
Name (synonym) PtPrx40 (POPTR_0013s15050 / Potri.013G154400)
Class Class III peroxidase    [Orthogroup: Prx012]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx40
start..stop
S start..stop
RcPrx52 531 0 45..360 1..317
MePrx20 506 0 45..360 11..329
CclPrx113 499 1e-179 51..360 7..318
BvPrx02 483 2e-172 13..360 21..365
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15105672..15106010 339 N° 2 15106294..15106485 192 N° 3 15106674..15106839 166 N° 4 15106931..15107316 386
join(15105672..15106010,15106294..15106485,15106674..15106839,15106931..15107316 )


exon

Literature and cross-references PtPrx40 (POPTR_0013s15050 / Potri.013G154400)
DNA ref. Phytozome 11:   scaffold_13 (15105672..15107316)
Omic ref. ePlant:   Potri.013G154400
Protein sequence: PtPrx40 (POPTR_0013s15050 / Potri.013G154400)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   360
PWM (Da):   %s   38651.23  
PI (pH):   %s   6.58
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVDGPDQMLPINRPPLQHLHAIDQTQEIYHKFNYIPLCLYILDYMALSKIFYGLCFSMLLLGLVHAQLSTTFYATTCPKALSTIRTAVLKAVVKEHRMGASLLRLHFHDCFVNGCDASVLLDDTSSFTGEKTAGPNANSLRGYDVIDTIKSQLESICPGVVSCADILAVAARDSVVALSGPSWTVQLGRRDSTTASLGAANSDLPSPLMDLSDLITSFSNKGFTAKEMVALSGSHTIGQARCLLFRNRVYNETSLDSTLATSLKSNCPNTGSDDSLSSLDATTPVTFDNSYFKNLANNKGLLHSDQQLFSGGTTDSQVKTYSINSATFYADFASAMVKMGSISPLTGSDGQIRTNCAKVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 13, 3 introns). No EST.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTAGACGGTCCAGACCAAATGCTTCCTATAAATAGGCCTCCTCTACAGCACTTACATGCCATCGATCAAACACAAGAGATATATCACAAGTTCAACTATATCCCTCTGTGTCTTTAC
ATTTTGGATTATATGGCTCTCTCAAAAATTTTCTACGGGTTATGTTTCTCTATGCTTTTGCTTGGATTAGTCCATGCACAGTTATCAACCACTTTCTATGCAACAACATGCCCTAAAGCC
CTCTCTACCATCAGAACTGCTGTACTAAAAGCAGTTGTCAAGGAGCATCGCATGGGAGCCTCCTTGCTCCGTCTCCATTTCCATGACTGCTTCGTTAAT
GCATGTTTCTCTTATCCCTCT
CCCTTTCTTTCACATACAGATATACATGCACACACAAGAGTGGGGAAGGAAGAAGGATATTAAGATTGTGCCTTGGGGAGGATAGTCTCTCCATGTTTTAGGTTTTTTAGTTTACCAACT
TGCACGTAAAACCTTGCATGCATGCACAAGGATGATAGTATACTGTGTGTTTAATTACTATATACAATAATTTCATTAAGAAATGTTATCGTTATTTTAAACATTGTAATTTGACGAGGA
TCTTTATTATTGATTCAAGCAGGGATGTGATGCATCAGTCCTATTAGATGACACTTCAAGTTTTACTGGAGAAAAGACTGCAGGCCCAAATGCAAATTCTTTGAGAGGTTATGATGTGAT
TGATACCATTAAGTCTCAATTGGAGTCAATTTGCCCTGGAGTTGTTTCTTGTGCTGATATTCTGGCTGTTGCTGCTCGAGATTCAGTTGTTGCA
GTAAGTAACCTAAAGCATATATATAA
GACAAGGTGCCTTCAAAGGCATTGAAATCCTTTTGAACCCTGATGTTTGAATGCTGATGCATGCCTTTTAAGGCCGTGAAGAAGGCACCGTGGAAACGACTCAATCCATACATTTCACAT
AAACTTGTGCGCATTTTGATTTCTTTTATATTTCTTCTCCAGTTGAGTGGACCTTCATGGACAGTTCAATTGGGGAGAAGAGATTCGACCACAGCAAGTTTGGGTGCTGCTAATTCCGAT
CTTCCATCTCCACTCATGGATCTGAGTGACCTTATTACTTCCTTCTCAAATAAAGGGTTCACTGCCAAAGAAATGGTTGCTCTCTCAG
GTAAAATAAAATTAAGGGAAATCATCGCCACA
ATTAAATAAGGATCTTGTACCAATTGACTTCGGTTTTGAAATTTTCTATAATCTTGTAGGATCTCACACAATAGGGCAAGCCAGGTGCCTGCTGTTTCGAAACCGTGTCTACAATGAGAC
CAGCCTAGATTCAACCTTGGCAACATCATTAAAATCAAATTGTCCAAACACAGGCAGTGATGACAGCCTTTCTTCACTGGATGCTACTACTCCTGTCACATTTGATAACTCTTATTTCAA
GAACCTGGCAAACAACAAGGGCCTTTTGCACTCGGATCAACAGCTTTTCAGTGGAGGCACTACGGACTCGCAGGTCAAGACATACAGCATCAATTCTGCTACATTCTATGCTGATTTTGC
TAGTGCCATGGTAAAGATGGGTAGCATTAGCCCCCTAACAGGAAGCGATGGACAGATTCGTACCAACTGCGCCAAAGTAAACTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTAGACGGTCCAGACCAAATGCTTCCTATAAATAGGCCTCCTCTACAGCACTTACATGCCATCGATCAAACACAAGAGATATATCACAAGTTCAACTATATCCCTCTGTGTCTTTAC
ATTTTGGATTATATGGCTCTCTCAAAAATTTTCTACGGGTTATGTTTCTCTATGCTTTTGCTTGGATTAGTCCATGCACAGTTATCAACCACTTTCTATGCAACAACATGCCCTAAAGCC
CTCTCTACCATCAGAACTGCTGTACTAAAAGCAGTTGTCAAGGAGCATCGCATGGGAGCCTCCTTGCTCCGTCTCCATTTCCATGACTGCTTCGTTAAT
GGATGTGATGCATCAGTCCTA
TTAGATGACACTTCAAGTTTTACTGGAGAAAAGACTGCAGGCCCAAATGCAAATTCTTTGAGAGGTTATGATGTGATTGATACCATTAAGTCTCAATTGGAGTCAATTTGCCCTGGAGTT
GTTTCTTGTGCTGATATTCTGGCTGTTGCTGCTCGAGATTCAGTTGTTGCA
TTGAGTGGACCTTCATGGACAGTTCAATTGGGGAGAAGAGATTCGACCACAGCAAGTTTGGGTGCTGCT
AATTCCGATCTTCCATCTCCACTCATGGATCTGAGTGACCTTATTACTTCCTTCTCAAATAAAGGGTTCACTGCCAAAGAAATGGTTGCTCTCTCAG
GATCTCACACAATAGGGCAAGCC
AGGTGCCTGCTGTTTCGAAACCGTGTCTACAATGAGACCAGCCTAGATTCAACCTTGGCAACATCATTAAAATCAAATTGTCCAAACACAGGCAGTGATGACAGCCTTTCTTCACTGGAT
GCTACTACTCCTGTCACATTTGATAACTCTTATTTCAAGAACCTGGCAAACAACAAGGGCCTTTTGCACTCGGATCAACAGCTTTTCAGTGGAGGCACTACGGACTCGCAGGTCAAGACA
TACAGCATCAATTCTGCTACATTCTATGCTGATTTTGCTAGTGCCATGGTAAAGATGGGTAGCATTAGCCCCCTAACAGGAAGCGATGGACAGATTCGTACCAACTGCGCCAAAGTAAAC
TGA

Retrieve as FASTA