Entry information : BrPrx61-1Aa_other (Bra026470)
Entry ID 3120
Creation 2009-08-11 (Christophe Dunand)
Last sequence changes 2009-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-07-24 (Christophe Dunand)
Peroxidase information: BrPrx61-1Aa_other (Bra026470)
Name (synonym) BrPrx61-1Aa_other (Bra026470)
Class Class III peroxidase    [Orthogroup: Prx029]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx61-1Aa_other
start..stop
S start..stop
BstrPrx68 659 0 1..341 1..341
TsPrx61 655 0 1..341 1..341
BoPrx61_other 652 0 1..341 1..341
AlyPrx61 652 0 1..341 1..341
Literature and cross-references BrPrx61-1Aa_other (Bra026470)
Literature Yang,T.J., Kwon,S.J., Kim,J.A, Kim,J.S., Lim,K.B., Jin,M., Park ,J.Y., Lim,M.H., Kim,H.I., Choi,B.S., Seol,Y.J., Park,D.S., Hahn ,J.H. and Park,B.S. End sequence of Brassica rapa BamHI (KBrB) BAC clone, Unpublished (2005
DNA ref. GenBank:   DX037732 [3' end]   DX892852 [Fragment]   AC232516.1 (59239..56615)
Protein sequence: BrPrx61-1Aa_other (Bra026470)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   341 (315)
PWM (Da):   %s   37415.96 (34628.4) Transmb domain:   %s   i5-27o
PI (pH):   %s   8.2 (8.20) Peptide Signal:   %s   cut: 27 range:27-341
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRQFVLFFPL LALVVISLAG TATVEAATGL NPPVKLVWHY YKVTNTCDDA ETYIRHQVEK FYRNDSSIAP KLLRLLYSDC MVNGCDASVL LQGPNSERTA PQNRGLGGFL IIDKIKKVLE  TRCPGVVSCA DILNLATRDA VHMAGAPSYP VLTGRRDGGI LNADAVDLPS PSISVEESLA YFKSKGLDVL DMTTLLGAHS MGKTHCSHIV NRLYNFKNTG KPDPSMNTTL VSELRNRCPP 
RTKKGQTDPL IYLNPDSGSS NRFSNSYYSR VLSHNAVLGV DQQLIYNDDS LEITQEFDAS FEDFRKSFAL AMSRMGSINV LTGKAGEIRR DCRVTNANYG A 

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns). No EST. cultivar="Inbred line 'Chiifu'", sub_species="pekinensis". Containing motif 'YSDC'. incorrect prediction from JGI: splicing error of intron2/exon3 due to a frame shift (sequencing error) (look for the good seq AC232516.1)