Entry information : GbPrx32 (gba_locus_23769_iso_2_len_1126_ver_2)
Entry ID 3183
Creation 2006-06-26 (Christophe Dunand)
Last sequence changes 2015-03-18 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbPrx32 (gba_locus_23769_iso_2_len_1126_ver_2)
Name (synonym) GbPrx32 (gba_locus_23769_iso_2_len_1126_ver_2)
Class Class III peroxidase    [Orthogroup: Prx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type Roots
Inducer Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx32
start..stop
S start..stop
GbPrx54 465 3e-166 5..329 13..337
PabPrx85 456 6e-163 4..329 11..339
PabPrx105 456 1e-162 9..328 22..341
PtaPrx10 452 3e-161 16..324 22..334
Literature and cross-references GbPrx32 (gba_locus_23769_iso_2_len_1126_ver_2)
Literature Johnk,N., Fossdal,C.G., Collinge,D.B. and Newman,M.-A. Differential display based identification of defense related genes in Norway spruce roots against the root dieback disease causing pathogen Rhizoctonia sp.
Protein ref. UniProtKB:   Q4VSU8 [3' end]
mRNA ref. GenBank:   AY639589.1 [3' end]
Protein sequence: GbPrx32 (gba_locus_23769_iso_2_len_1126_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (303)
PWM (Da):   %s   35450.19 (32671.6) Transmb domain:   %s   i5-27o
PI (pH):   %s   9.87 (9.86) Peptide Signal:   %s   cut: 27 range:27-329
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MARPVVTLSI SAFLFLLITC LPALHAQLTA DFYQKSCPRA LQIVRSAVQQ AVLKEARMGA SLLRLHFHDC FVQGCDASLL LDDTSTIRSE KRSNPNMNSA RGFDVVDTIK SKLESACPGV  VSCADILAIA ARDSVILSGG PFWNVLLGRK DSRTASLSGS NNNIPPPNAT LQTLITKFRN QGLSITDLVA LVGGHTIGQS RCTSFKQRLY NQAGKGQPDS TIAKPYLSQL RAKCPASGGD 
NNLSPLDFVS PTRFDNQYYK NLVVGKGLLN SDQELYSSSG SQTMSVAKGY AANPNAFFKQ FAESMVKMGN ISPLTSSNGE IRKNCRRIN 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq. No ESt found.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCAGGC CGGTCGTTAC TTTGTCCATA TCGGCCTTTT TGTTCCTCCT GATTACGTGC TTGCCGGCAT TGCATGCACA ATTGACTGCA GACTTCTACC AAAAGTCGTG TCCGCGAGCG  CTCCAGATTG TGAGGTCAGC AGTGCAGCAG GCGGTGCTTA AAGAAGCTCG TATGGGGGCG TCTTTACTTC GTCTTCATTT TCACGATTGC TTCGTGCAGG GCTGCGATGC GTCATTGTTG  CTGGATGACA CCTCCACAAT CCGAAGTGAG AAAAGATCGA ATCCAAACAT GAATTCTGCG AGGGGATTCG ACGTTGTGGA TACCATTAAA AGCAAACTGG AGAGTGCCTG CCCCGGTGTT  GTATCTTGTG CCGACATCCT TGCTATTGCA GCTCGGGACT CTGTGATTCT GAGTGGAGGA CCATTCTGGA ATGTACTTTT GGGACGGAAG GATTCGAGAA CTGCAAGTTT GAGCGGCTCA  AACAACAATA TTCCGCCACC TAATGCAACA CTGCAAACTC TCATCACAAA GTTTAGAAAC CAAGGGCTCT CAATCACAGA CTTAGTTGCA CTCGTCGGAG GGCATACAAT TGGGCAGTCG  AGGTGCACGA GCTTCAAGCA GAGGCTGTAC AATCAGGCGG GAAAGGGACA GCCAGATTCT ACAATAGCAA AGCCATATCT GTCACAGTTG AGAGCCAAAT GTCCTGCTTC GGGTGGAGAT  AACAATTTGT CGCCCTTAGA TTTTGTGAGC CCGACGAGAT TCGACAACCA GTATTACAAG AACTTAGTGG TGGGGAAGGG GCTGCTTAAC TCCGATCAGG AGCTGTATTC CAGCTCCGGA  AGCCAAACCA TGTCTGTGGC GAAAGGTTAT GCGGCTAATC CAAACGCATT TTTCAAGCAA TTCGCTGAGT CGATGGTGAA GATGGGGAAT ATCAGTCCTC TCACCTCCTC CAACGGAGAG 
ATCAGAAAGA ACTGCCGCAG AATCAATTGA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTGAGAGGGT AGACACTCGC ATATAACAGT CTGTTATTTT CTCATATTCT TATAAACATT CTCGTTTGCA AAGATGGCCA GGCCGGTCGT TACTTTGTCC ATATCGGCCT TTTTGTTCCT  CCTGATTACG TGCTTGCCGG CATTGCATGC ACAATTGACT GCAGACTTCT ACCAAAAGTC GTGTCCGCGA GCGCTCCAGA TTGTGAGGTC AGCAGTGCAG CAGGCGGTGC TTAAAGAAGC  TCGTATGGGG GCGTCTTTAC TTCGTCTTCA TTTTCACGAT TGCTTCGTGC AGGGCTGCGA TGCGTCATTG TTGCTGGATG ACACCTCCAC AATCCGAAGT GAGAAAAGAT CGAATCCAAA  CATGAATTCT GCGAGGGGAT TCGACGTTGT GGATACCATT AAAAGCAAAC TGGAGAGTGC CTGCCCCGGT GTTGTATCTT GTGCCGACAT CCTTGCTATT GCAGCTCGGG ACTCTGTGAT  TCTGAGTGGA GGACCATTCT GGAATGTACT TTTGGGACGG AAGGATTCGA GAACTGCAAG TTTGAGCGGC TCAAACAACA ATATTCCGCC ACCTAATGCA ACACTGCAAA CTCTCATCAC  AAAGTTTAGA AACCAAGGGC TCTCAATCAC AGACTTAGTT GCACTCGTCG GAGGGCATAC AATTGGGCAG TCGAGGTGCA CGAGCTTCAA GCAGAGGCTG TACAATCAGG CGGGAAAGGG  ACAGCCAGAT TCTACAATAG CAAAGCCATA TCTGTCACAG TTGAGAGCCA AATGTCCTGC TTCGGGTGGA GATAACAATT TGTCGCCCTT AGATTTTGTG AGCCCGACGA GATTCGACAA  CCAGTATTAC AAGAACTTAG TGGTGGGGAA GGGGCTGCTT AACTCCGATC AGGAGCTGTA TTCCAGCTCC GGAAGCCAAA CCATGTCTGT GGCGAAAGGT TATGCGGCTA ATCCAAACGC  ATTTTTCAAG CAATTCGCTG AGTCGATGGT GAAGATGGGG AATATCAGTC CTCTCACCTC CTCCAACGGA GAGATCAGAA AGAACTGCCG CAGAATCAAT TGATGTAATG TCACTAACGG 
AGAGATCAGA AATAACTACA TATAACAGAT ATTAGAGCAA TAAATC 

Retrieve as FASTA