Entry information : BoPrx04_other
Entry ID 3186
Creation 2007-01-12 (Christophe Dunand)
Last sequence changes 2007-01-12 (Christophe Dunand)
Sequence status partial
Reviewer Filippo Passardi
Last annotation changes 2008-05-02 (Christophe Dunand)
Peroxidase information: BoPrx04_other
Name BoPrx04_other
Class Class III peroxidase     [Orthogroup: Prx014]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica oleracea (Cauliflower)    [TaxId: 3712 ]
Cellular localisation N/D
Tissue type Etiolated seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BoPrx04_other
start..stop
S start..stop
BrPrx04-1Aa_other 571 0 1..295 1..297
BstrPrx77 568 0 1..295 1..296
BrPrx04-1Ab_other 563 0 1..295 1..295
TsPrx04-1 561 0 1..295 1..296
Literature and cross-references BoPrx04_other
Literature Ayele,M., Haas,B.J., Kumar,N., Wu,H., Xiao,Y., Van Aken,S., Utterback,T.R., Wortman,J.R., White,O.R. and Town,C.D. Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis, Genome Res. 15 (4), 487-495 (2005)
DNA ref. GenBank:   BZ478309 [5' end]   BH682770 [3' end]
EST ref. GenBank:   AM389155
Protein sequence: BoPrx04_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   295 (276)
PWM (Da):   %s   32007.84 (29823.7)  
PI (pH):   %s   6.73 (6.27) Peptide Signal:   %s   cut: 20 range:20-295
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAIFKIIVLL LSLFCFCQTQ LSPTFYDQSC PNALSTIRSS IRTAISRERR MAASLIRLHF HDCFVNGCDA SVMLVATPTM ESERDSVANF QSARGFEVID QAKSAVESVC PGVVSCADII  AVAARDASEY VGGPRYEVKV GRRDSTAAFR AIADSGDLPS FRASLDELSD LFLRKGLNTR DLVALSGAHT LGQAQCVTFK ERLYDNSSDI DAGFSSTRKR RCPVNGGDTN LAPLDQVTPN 
SFDNNYYRNL MQKKGLASDQ VLFGAGASTD SIVSEYSRNP SRFASDFAAA MIQMG 

Retrieve as FASTA  
Remarks Partial sequence from 4 GSS. (Exon 1: BZ478309,BZ478300, BZ505036 and Exons 3 and 4: BH682770 (225 nt of intron 2)). Overlap between the two fragments with the mRNA sequence. Short 3' end is missing.