Entry information : SaPrx03
Entry ID 3198
Creation 2006-06-26 (Christophe Dunand)
Last sequence changes 2006-06-26 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2019-11-27 (Christophe Dunand)
Peroxidase information: SaPrx03
Name SaPrx03
Class Class III peroxidase    [Orthogroup: Prx015]
Taxonomy Eukaryota Viridiplantae Streptophyta Orobanchaceae Striga
Organism Striga asiatica (witchweed)    [TaxId: 4170 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SaPrx03
start..stop
S start..stop
SaPrx17 535 0 1..319 1..319
MguPrx45 518 0 1..319 1..320
CroPrx40 499 2e-180 1..319 1..318
HaPrx[P]129 498 6e-180 23..319 27..322
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 143113..143322 210 N° 2 142821..143009 189 N° 3 142548..142710 163 N° 4 142073..142470 398
complement(join(142073..142470,142548..142710,142821..143009,143113..143322))


exon

Literature and cross-references SaPrx03
Literature Liang,L. and Lynn,D.G. Cloning of Genes for Striga asiatica Haustorium Formation by Suppressive Subtractive Hybridization (SSH).Unpublished
Protein ref. GenBank:   GER40849.1 UniProtKB:   Q1PGA3
mRNA ref. GenBank:   DQ445121
Protein sequence: SaPrx03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   319 (304)
PWM (Da):   %s   34249.33 (32767.4)  
PI (pH):   %s   9.12 (9.12) Peptide Signal:   %s   cut: 16 range:16-319
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAAALVISLV TIVLSSNFHC SSNALSVNYY QKTCPRAEST ITKVVKEGMT NDKTVAAAIL RMHFHDCFIR GCDASVLLNS KGNNQAKKDG PPNISLHAFY VIDNAKQQVE KMCPGVVSCA  DILALAARDA VTLSGGPTWD VPKGRKDGRI SNALDTRQLP APTFNISQLQ QSFSQRGLSV DDLVALSGGH TLGFSHCSSF KNRIHNFSNK TEVDPSLDTS FAAQLRQVCP VGNTNKNAGA 
NLDSSPFVFD NAYYKLVLQG KSIFSSDQAL LATSRTKALV AKFASSQKEF YEAFVKSMIK MSSISGGGSE IRLDCRAVN 

Retrieve as FASTA  
Remarks Complete sequence from 1 genomic.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCAGCAG CACTCGTAAT TTCTCTAGTT ACTATTGTTC TCTCATCAAA TTTTCATTGT TCATCAAATG CACTAAGTGT AAATTACTAC CAAAAAACAT GCCCCAGGGC CGAGTCGACC  ATCACAAAAG TCGTGAAAGA AGGCATGACA AATGACAAAA CAGTTGCAGC CGCTATACTT AGAATGCACT TCCACGATTG CTTTATTAGA GGTTGTGATG CTTCCGTGCT GCTGAATAGT  AAGGGAAACA ACCAAGCAAA AAAGGATGGA CCTCCAAATA TTTCTTTACA TGCATTTTAC GTGATCGACA ATGCCAAGCA GCAAGTCGAG AAAATGTGCC CCGGTGTTGT GTCGTGTGCT  GACATTTTGG CTCTTGCTGC AAGAGACGCC GTAACACTTT CCGGGGGTCC CACATGGGAT GTACCAAAAG GGAGGAAAGA CGGAAGGATT TCAAACGCAT TAGACACTCG CCAATTGCCT  GCACCGACTT TCAACATATC TCAGTTGCAA CAGAGCTTCT CACAAAGAGG CCTTTCTGTG GATGACTTAG TGGCACTCTC AGGCGGACAC ACACTGGGTT TCTCTCATTG TTCGTCCTTC  AAAAACAGAA TCCACAACTT CAGCAACAAA ACCGAAGTGG ACCCATCTTT GGACACGTCA TTCGCTGCCC AGCTAAGGCA AGTGTGCCCT GTGGGAAACA CGAACAAGAA TGCAGGGGCC  AACTTGGACT CGTCTCCGTT TGTGTTCGAC AACGCCTATT ACAAATTGGT GCTCCAAGGG AAGAGCATTT TTTCCTCTGA CCAGGCCCTG CTTGCTACTT CAAGGACTAA GGCATTGGTT  GCGAAATTCG CGTCCTCTCA AAAGGAGTTC TATGAGGCGT TTGTGAAGTC CATGATCAAG ATGAGTAGCA TTAGTGGAGG TGGGAGTGAG ATTAGGCTGG ATTGTAGGGC TGTTAATTAA 

Retrieve as FASTA