Entry information : PtPrx[P]87 (POPTR_0015s13650)
Entry ID 3204
Creation 2006-07-21 (Claudia Cosio)
Last sequence changes 2012-03-08 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrx[P]87 (POPTR_0015s13650)
Name (synonym) PtPrx[P]87 (POPTR_0015s13650)
Class Class III peroxidase     [Orthogroup: Prx036]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrx[P]87
start..stop
S start..stop
MePrx90 503 0 3..310 11..323
RcPrx67 495 8e-179 3..310 11..323
PpePrx62 479 2e-172 8..310 17..324
EgrPrx56 476 5e-171 2..310 10..323
Literature and cross-references PtPrx[P]87 (POPTR_0015s13650)
DNA ref. Phytozome 12:   scaffold_15 (13513982..13512782)
Omic ref. ePlant:   Potri.015G138300
Protein sequence: PtPrx[P]87 (POPTR_0015s13650)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   309 (291)
PWM (Da):   %s   33172.73 (31274.6)  
PI (pH):   %s   9.07 (8.90) Peptide Signal:   %s   cut: 19 range:19-309
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSLAISFLLL ILISPSKAVL NNAHYYDQTC PQAEKIIFET VRNASMHDPK VPARILGMFF HDCFIRGCDA SIxxxxTPGN QAEKDGPPT* SxNVSVRSFY xIDDAKAKLE MACPHTVSCA  DIIAIAARDV VAMSGKPSWN VLTGRKNGRV SKANDTINLP APTFNAMQLI QSFAKRGLGV KDLVALSGGH NLGFSHCSSF EARLQNFSSV HDIDPSMNTR FAGNLKRKCP KPNKDHSAGE 
FLDSTSSTFD NDYYKRDIEG KGIFGSYHAL LGDYRDQSLF FREFAASMIK LGKVGVIKNG EVRFKCRVVN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 15, 3 introns). No EST. Frameshifts (exon 2 and 4) with residues missing adn stop codon. complement(join(13512782..13512886,13512895..13513320,13513469..13513656,13513785..13513982))
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCTTTAG CGATTAGCTT TCTCCTCCTA ATCTTGATTT CGCCTTCGAA AGCTGTGCTT AATAATGCTC ATTATTATGA TCAAACATGT CCACAAGCAG AGAAGATAAT TTTTGAGACA  GTTCGTAATG CTTCCATGCA TGATCCTAAA GTCCCAGCTC GTATACTTGG GATGTTCTTT CATGACTGCT TCATAAGGGT ATGTAATTCC TGTCTTAGCA CATGTAAGCA TGCGAACAAG  TGCATGAGCA GTAGTCTTTA GCAAGTAGTA AATGCAGAAA ACAGTTTATA GCAAATTATC TGACTGGAAT ATTTCTTGAT ACACAGGGAT GTGATGCATC CATTTTnnnn nnnnnnACTC  CTGGAAACCA AGCAGAGAAA GATGGCCCTC CCACATAGTC CCnnAATGTC TCAGTTCGAT CATTCTACGC nATCGATGAT GCCAAAGCTA AGCTTGAAAT GGCTTGTCCA CACACGGTTT  CATGTGCTGA TATCATAGCC ATAGCAGCAA GAGATGTCGT GGCCATGGTA ACAAGAAAAC AAGCACTTCC AGCATTTTTC TACATGTCCA CATATATGAT TAAAAATGGA CAAGTTTTAG  CATAACTTTT CTTTTAAAGG CATTATATTG TTTTGTTTTC TTCTAATATC ATCTCTCATG TGATATTGTC ATCAGTCTGG AAAACCTTCT TGGAATGTGC TGACAGGAAG AAAAAATGGA  AGAGTGTCTA AAGCTAATGA TACAATTAAC TTACCAGCTC CAACCTTCAA TGCTATGCAA TTAATTCAAA GCTTTGCTAA GAGAGGTCTA GGAGTTAAAG ACTTGGTAGC TTTGTCAGGT  GGCCACAATT TAGGGTTCTC ACATTGCTCT TCTTTCGAAG CTCGACTTCA AAACTTTAGT TCAGTTCATG ACATTGATCC AAGCATGAAT ACTCGGTTTG CTGGGAATCT TAAAAGGAAA  TGCCCTAAAC CAAACAAGGA TCACAGTGCA GGAGAATTCT TGGACTCAAC CTCATCAACA TTCGATAATG ACTATTACAA GAGAGATATC GAAGGAAAAG GTATCTTTGG TTCATATCAT  GCACTGCTTG GTGATTACAG GTAAAGATGG ATCAAAGTTT GTTCTTCAGA GAATTTGCAG CTTCAATGAT AAAACTTGGA AAAGTCGGGG TAATAAAAAA TGGAGAAGTG AGGTTTAAGT 
GCCGAGTGGT TAAT 

Retrieve as FASTA