Entry information : LsaPrx44
Entry ID 3482
Creation 2006-08-14 (Christophe Dunand)
Last sequence changes 2006-08-14 (Christophe Dunand)
Sequence status partial
Reviewer Filippo Passardi
Last annotation changes 2010-04-30 (Christophe Dunand)
Peroxidase information: LsaPrx44
Name LsaPrx44
Class Class III peroxidase     [Orthogroup: Prx036]*
Taxonomy Eukaryota Viridiplantae Streptophyta Asteraceae Lactuca
Organism Lactuca sativa (Lettuce)    [TaxId: 4236 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LsaPrx44
start..stop
S start..stop
ZePrx01 501 0 3..295 6..293
CroPrx34 461 1e-165 2..295 1..294
MePrx90 460 5e-165 3..295 8..300
RcPrx67 450 4e-161 4..295 8..300
Literature and cross-references LsaPrx44
Literature Michelmore,R.W., Knapp,S., Rieseberg,L., Bradford,K., Kesseli,R., Boore,J., Kozik,A., Matvienko,M., Lavelle,D. and McHale,L. Lettuce (Lactuca sativa) ESTs (set 3) from the Compositae Genome
EST ref. GenBank:   DY983137.1 [5' end]
Protein sequence: LsaPrx44
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   295 (274)
PWM (Da):   %s   32453.35 (30175.1)  
PI (pH):   %s   8.47 (8.65) Peptide Signal:   %s   cut: 22 range:22-295
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MIMSTIVAYI LILSVVPFSE AVLSAHYYDQ TCPQAENIIY QTVRNASIYD PKVPARLLRM FFHDCFIRGC DASLLLDSTT GNKAEKDGPP NISVRSFYVI DDAKTKLGKA CPHTVSCADV  IAIAARDVVA MSQGPWWNVL KGRKDGRVSL ANETINLPSP FSNTSTLIKS FAKRGLGVKD LVALSGGHTL GFSHCSSFSA RLHNFSTENF SDPSINSEFA MNLKKKCPIH NKDHNAGEFL 
DSTSSTFDND YYKRITMGKG VFGSDQALYG DRRNKIIVDS FAKDRNLFLS EFAIS 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. 3'end is missing, and frame shift. Cultivar="Salinas".
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGGGACCTTT TAAAATTTCT CCGCTTCAGA AATGGCTAAA TTGTCGATTT CTTTCTCCCA AAGTAAGATG ATAATGTCAA CCATTGTTGC CTATATTCTC ATACTTTCTG TAGTTCCTTT  TTCGGAAGCG GTCCTCAGTG CGCATTATTA CGATCAAACA TGTCCACAGG CCGAGAATAT TATTTACCAA ACAGTTCGTA ATGCCTCTAT CTACGACCCT AAAGTCCCCG CTCGCCTCCT  ACGCATGTTC TTCCATGACT GTTTCATAAG GGGATGTGAT GCATCACTGT TGCTCGACTC AACTACAGGA AACAAGGCAG AAAAAGATGG ACCTCCAAAT ATCTCAGTTC GATCATTTTA  TGTAATTGAT GATGCCAAAA CAAAACTCGG AAAGGCATGT CCTCATACAG TTTCGTGTGC AGACGTAATA GCAATTGCTG CAAGAGATGT AGTAGCAATG TCTCAAGGTC CATGGTGGAA  TGTACTTAAA GGAAGGAAAG ATGGGCGAGT ATCGTTAGCT AACGAAACTA TAAACTTGCC ATCTCCATTT TCGAATACCT CAACACTTAT TAAGAGTTTT GCTAAAAGAG GATTAGGGGT  CAAAGATTTG GTTGCACTTT CAGGTGGACA TACTCTAGGG TTTTCACATT GTTCATCTTT TAGTGCTCGA CTACACAACT TTAGCACTGA AAACTTTTCC GATCCTAGCA TTAACAGTGA  GTTTGCTATG AATCTGAAGA AGAAATGCCC CATACATAAC AAGGATCACA ACGCAGGAGA GTTCTTAGAC TCAACTTCTT CAACATTTGA TAATGACTAT TACAAAAGAA TTACTATGGG 
TAAGGGTGTG TTTGGGTCAG ACCAGCTCTG TATGGAGATC GAAGAAACAA GATCATTGTG GACTCATTTG CCAAAGACAG GAATCTGTTT CTCAGCGAAT TTGCAATTTC CA 

Retrieve as FASTA