Entry information : LcPrx01_other
Entry ID 3545
Creation 2006-08-18 (Christophe Dunand)
Last sequence changes 2012-06-29 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-06-29 (Christophe Dunand)
Peroxidase information: LcPrx01_other
Name LcPrx01_other
Class Class III peroxidase     [Orthogroup: Prx037]*
Taxonomy Eukaryota Viridiplantae Streptophyta Sapindaceae Litchi
Organism Litchi chinensis    [TaxId: 151069 ]
Cellular localisation N/D
Tissue type Pericarps
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LcPrx01_other
start..stop
S start..stop
LcPrx01 447 3e-161 1..227 66..292
CclPrx48 385 1e-136 1..225 68..292
CsPrx07 385 1e-136 1..225 68..292
CppPrx06 385 1e-136 1..225 66..290
Literature and cross-references LcPrx01_other
Literature Pan D.M., Lin L., Guo Z. Cloning and characterization of peroxidase gene in Litchi chinensis Sonn. pericarp
Protein ref. UniProtKB:   Q206Y8
mRNA ref. GenBank:   DQ408429.1
Protein sequence: LcPrx01_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   234
PWM (Da):   %s   24973.54  
PI (pH):   %s   8.28
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
DCFVDGCDGS LLLDDTSTFV GEKTAVPNNN SVRGFNVVDQ IKAKLEKACP GVVSCADLLA IAARDSVVHL GGPSWTVRLG RRDSKTASRA LANTSIPPPT SNLSALISSF SAQGLSLKDL 
VALSGAHTIG LARCTSFRGH IYNDTNIDSS FAMSLRRKCP RSGNDNALAN LDRQTPFCFD KLYYDNLLKK KGLLHSDQEL FKGGSADPFV KKYANNTSAF FKDFAGASGQ DEQT 

Retrieve as FASTA  
Remarks Partial sequence from 1 mRNA. 5' and 3' ends are missing.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GACTGCTTTG TCGATGGGTG CGATGGATCG CTACTTTTGG ACGACACATC CACCTTTGTT GGCGAAAAAA CAGCTGTTCC AAACAATAAC TCAGTCAGAG GTTTCAATGT GGTTGATCAA  ATTAAAGCTA AACTAGAGAA AGCATGTCCT GGAGTGGTGT CCTGTGCTGA TCTTCTTGCT ATTGCAGCTC GAGATTCGGT TGTTCATTTA GGAGGTCCCT CATGGACAGT GAGGTTGGGA  AGAAGAGATT CTAAAACTGC TAGCAGAGCT CTTGCGAACA CCTCCATCCC GCCACCCACT TCTAATTTAA GTGCTCTCAT ATCAAGCTTC TCCGCTCAGG GTCTCTCTTT AAAGGACTTG  GTTGCTCTTT CTGGTGCGCA CACGATAGGC CTGGCCAGAT GCACATCATT TCGAGGGCAC ATCTACAATG ATACAAATAT AGACAGCTCC TTTGCCATGT CATTGCGGCG AAAGTGCCCA  AGATCTGGAA ATGACAATGC CCTCGCAAAC CTCGACCGCC AGACCCCGTT TTGTTTTGAT AAATTATATT ACGACAATTT GTTGAAGAAG AAGGGTCTTC TTCATTCAGA TCAAGAGCTC 
TTCAAGGGTG GTTCTGCTGA TCCTTTCGTC AAAAAATATG CCAACAACAC TTCCGCCTTT TTCAAGGACT TTGCCGGGGC TAGTGGTCAA GATGAGCAAA CT 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GACTGCTTTG TCGATGGGTG CGATGGATCG CTACTTTTGG ACGACACATC CACCTTTGTT GGCGAAAAAA CAGCTGTTCC AAACAATAAC TCAGTCAGAG GTTTCAATGT GGTTGATCAA  ATTAAAGCTA AACTAGAGAA AGCATGTCCT GGAGTGGTGT CCTGTGCTGA TCTTCTTGCT ATTGCAGCTC GAGATTCGGT TGTTCATTTA GGAGGTCCCT CATGGACAGT GAGGTTGGGA  AGAAGAGATT CTAAAACTGC TAGCAGAGCT CTTGCGAACA CCTCCATCCC GCCACCCACT TCTAATTTAA GTGCTCTCAT ATCAAGCTTC TCCGCTCAGG GTCTCTCTTT AAAGGACTTG  GTTGCTCTTT CTGGTGCGCA CACGATAGGC CTGGCCAGAT GCACATCATT TCGAGGGCAC ATCTACAATG ATACAAATAT AGACAGCTCC TTTGCCATGT CATTGCGGCG AAAGTGCCCA  AGATCTGGAA ATGACAATGC CCTCGCAAAC CTCGACCGCC AGACCCCGTT TTGTTTTGAT AAATTATATT ACGACAATTT GTTGAAGAAG AAGGGTCTTC TTCATTCAGA TCAAGAGCTC 
TTCAAGGGTG GTTCTGCTGA TCCTTTCGTC AAAAAATATG CCAACAACAC TTCCGCCTTT TTCAAGGACT TTGCCGGGGC TAGTGGTCAA GATGAGCAAA CT 

Retrieve as FASTA