Entry information : RHspCP01_NGR234
Entry ID 3569
Creation 2006-08-23 (Filippo Passardi)
Last sequence changes 2016-01-06 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-01-06 (Christophe Dunand)
Peroxidase information: RHspCP01_NGR234
Name RHspCP01_NGR234
Class Catalase peroxidase    [Orthogroup: CP001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhizobiaceae Rhizobium
Organism Rhizobium sp.    [TaxId: 391 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RHspCP01_NGR234
start..stop
S start..stop
SmedCP01 1167 0 1..623 40..662
SmeCP01 1161 0 3..623 1..621
RetCP01_CFN42 1067 0 3..623 1..622
RleCP01 1056 0 3..623 1..622
Literature and cross-references RHspCP01_NGR234
Literature Broughton,W.J et al., Comparative DNA analysis of two large contigs of the Rhizobium sp. NGR234 megaplasmid 2. Unpublished
Protein ref. GenBank:   AAQ87566.1 UniProtKB:   Q6W102
DNA ref. GenBank:   AY316747.1
Protein sequence: RHspCP01_NGR234
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   662
PWM (Da):   %s   72997.91  
PI (pH):   %s   6.92
Sequence
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Send to Peroxiscan
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MTMDQKSDNA GKCPVAHTVP KGRSNRDWWP DQLDVQVLHQ HSGLSDPMGK AFNYAEEFKK LDLEELKKDL HALMTESQDW WPADFGHYGG LFIRMAWHSA GTYRITDGRG GAGQGQQRFA  PLNSWPDNAN LDKARRLLWP IKQKYGNRIS WADLMILTGN VALESMGFQT FGFAGGRADV WEPQELFWGP EGTWLGDERY SGERQLDEPL AAVQMGLIYV NPEGPNGNPD PVAAAREIRE  TFARMAMNDE ETVALIAGGH TFGKTHGAGD PSFIGPDPEG GAIEDQGLGW KSTFGTGVGK DAITGGPEVT WSQTPTRWSN YFFENLFNYE WELTKSPAGA HQWKAKNADA SIPDAFDASK  KHVPTMLTTD LSLRFDPIYE KISRRFLENP DQFADAFARA WFKLTHRDMG PKVRYLGPEV PAEDLIWQDV IPAVDHKLVD ENDVADLKGK VLASGLSVQE LVSTAWASAS TFRGSDKRGG  ANGARIRLAP QKDWEVNQPA QLARVLSVLE GIQKDFNTAH TGGKKISLAD LIVLAGAAGV EKAAKAGGHD ITVPFTPGRA DASEAQTDAA SFAALEPRAD GFRNYVSRRR RQFMKPEEAL 
VDRAQLLTLT APELTVLVGG LRVRLHLPSG GSDERLLRQP SRHGHAVVTH GRKRRRLRRA RP 

Retrieve as FASTA  
Remarks Complete sequence from genomic (megaplasmid 2).
DNA
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ATGACCATGG ATCAGAAAAG TGACAACGCG GGCAAATGTC CCGTCGCACA TACGGTACCG AAAGGCAGGT CGAACCGCGA CTGGTGGCCG GATCAACTTG ACGTCCAGGT TCTCCACCAG  CATTCCGGTC TTTCCGACCC GATGGGCAAG GCGTTCAACT ACGCCGAGGA GTTCAAGAAG CTCGACCTCG AGGAGCTGAA GAAAGATCTG CACGCGCTGA TGACGGAGTC GCAAGATTGG  TGGCCGGCCG ACTTCGGTCA CTACGGCGGA CTCTTCATCC GCATGGCCTG GCACAGCGCC GGCACCTACC GCATCACTGA CGGCCGCGGA GGCGCCGGTC AGGGCCAGCA GCGCTTCGCA  CCGCTCAACA GCTGGCCGGA TAACGCCAAT CTCGACAAGG CCCGCCGTCT GCTGTGGCCG ATCAAGCAGA AATACGGCAA CAGGATTTCT TGGGCGGATC TGATGATCCT CACCGGCAAC  GTCGCACTTG AATCCATGGG CTTCCAGACC TTCGGTTTTG CCGGCGGCCG TGCCGACGTG TGGGAACCTC AGGAACTGTT CTGGGGACCG GAGGGCACTT GGCTGGGCGA CGAGCGCTAT  AGCGGCGAAC GGCAATTGGA CGAGCCGCTC GCCGCCGTGC AGATGGGTCT CATCTATGTC AATCCTGAAG GTCCGAACGG CAATCCCGAT CCGGTTGCTG CCGCGCGTGA GATCCGCGAG  ACCTTCGCCC GCATGGCGAT GAACGACGAA GAGACCGTGG CGCTGATCGC CGGTGGCCAC ACCTTCGGCA AGACCCATGG CGCCGGCGAT CCGTCGTTCA TCGGTCCGGA CCCGGAAGGT  GGTGCGATCG AGGATCAGGG TCTCGGCTGG AAGAGCACCT TCGGCACCGG TGTAGGCAAG GACGCGATCA CGGGCGGGCC GGAGGTGACC TGGTCTCAGA CGCCGACCCG GTGGAGCAAC  TATTTCTTCG AGAATCTTTT CAACTACGAA TGGGAGCTGA CCAAGAGCCC GGCTGGTGCC CATCAATGGA AGGCGAAGAA TGCCGATGCC TCCATCCCGG ACGCCTTTGA CGCGTCCAAG  AAACATGTTC CGACCATGCT GACCACCGAT CTGTCGCTCC GCTTCGACCC GATTTACGAG AAGATCTCGC GCCGCTTCCT CGAAAACCCG GATCAGTTCG CCGACGCCTT CGCCCGCGCC  TGGTTCAAGT TGACCCACCG CGACATGGGT CCGAAGGTCC GCTATCTCGG CCCGGAAGTT CCGGCGGAAG ACCTGATCTG GCAGGACGTG ATCCCGGCTG TCGACCACAA GCTGGTTGAC  GAGAATGACG TCGCCGACCT CAAGGGCAAG GTCCTTGCCT CCGGTCTTTC GGTGCAGGAA CTGGTTTCCA CGGCCTGGGC TTCGGCTTCG ACCTTCCGCG GCTCCGACAA GCGCGGCGGT  GCCAATGGTG CCCGCATCCG CCTCGCACCG CAGAAGGATT GGGAAGTCAA CCAGCCGGCC CAACTCGCCA GGGTCCTCTC CGTTCTTGAG GGCATCCAGA AGGACTTCAA CACTGCTCAT  ACCGGCGGCA AGAAGATTTC GCTTGCCGAC CTGATCGTGC TTGCTGGCGC GGCCGGCGTG GAGAAGGCGG CAAAGGCAGG CGGCCACGAT ATCACCGTGC CGTTCACGCC GGGTCGAGCG  GATGCCTCGG AGGCGCAGAC CGACGCTGCG TCTTTCGCGG CGCTCGAACC CCGTGCCGAC GGCTTCCGCA ATTATGTGAG CCGCCGCCGC CGGCAGTTCA TGAAACCGGA AGAGGCTCTG  GTGGATCGGG CGCAGCTGCT GACGCTGACC GCGCCGGAAC TGACCGTGCT CGTCGGCGGC CTGCGTGTGC GTCTTCACCT CCCGTCCGGA GGTTCTGACG AACGACTTCT TCGTCAACCT 
TCTCGACATG GGCACGCAGT GGTCACCCAT GGCCGAAAAA GAAGGCGTCT ACGAAGGGCG CGACCG 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACCATGG ATCAGAAAAG TGACAACGCG GGCAAATGTC CCGTCGCACA TACGGTACCG AAAGGCAGGT CGAACCGCGA CTGGTGGCCG GATCAACTTG ACGTCCAGGT TCTCCACCAG  CATTCCGGTC TTTCCGACCC GATGGGCAAG GCGTTCAACT ACGCCGAGGA GTTCAAGAAG CTCGACCTCG AGGAGCTGAA GAAAGATCTG CACGCGCTGA TGACGGAGTC GCAAGATTGG  TGGCCGGCCG ACTTCGGTCA CTACGGCGGA CTCTTCATCC GCATGGCCTG GCACAGCGCC GGCACCTACC GCATCACTGA CGGCCGCGGA GGCGCCGGTC AGGGCCAGCA GCGCTTCGCA  CCGCTCAACA GCTGGCCGGA TAACGCCAAT CTCGACAAGG CCCGCCGTCT GCTGTGGCCG ATCAAGCAGA AATACGGCAA CAGGATTTCT TGGGCGGATC TGATGATCCT CACCGGCAAC  GTCGCACTTG AATCCATGGG CTTCCAGACC TTCGGTTTTG CCGGCGGCCG TGCCGACGTG TGGGAACCTC AGGAACTGTT CTGGGGACCG GAGGGCACTT GGCTGGGCGA CGAGCGCTAT  AGCGGCGAAC GGCAATTGGA CGAGCCGCTC GCCGCCGTGC AGATGGGTCT CATCTATGTC AATCCTGAAG GTCCGAACGG CAATCCCGAT CCGGTTGCTG CCGCGCGTGA GATCCGCGAG  ACCTTCGCCC GCATGGCGAT GAACGACGAA GAGACCGTGG CGCTGATCGC CGGTGGCCAC ACCTTCGGCA AGACCCATGG CGCCGGCGAT CCGTCGTTCA TCGGTCCGGA CCCGGAAGGT  GGTGCGATCG AGGATCAGGG TCTCGGCTGG AAGAGCACCT TCGGCACCGG TGTAGGCAAG GACGCGATCA CGGGCGGGCC GGAGGTGACC TGGTCTCAGA CGCCGACCCG GTGGAGCAAC  TATTTCTTCG AGAATCTTTT CAACTACGAA TGGGAGCTGA CCAAGAGCCC GGCTGGTGCC CATCAATGGA AGGCGAAGAA TGCCGATGCC TCCATCCCGG ACGCCTTTGA CGCGTCCAAG  AAACATGTTC CGACCATGCT GACCACCGAT CTGTCGCTCC GCTTCGACCC GATTTACGAG AAGATCTCGC GCCGCTTCCT CGAAAACCCG GATCAGTTCG CCGACGCCTT CGCCCGCGCC  TGGTTCAAGT TGACCCACCG CGACATGGGT CCGAAGGTCC GCTATCTCGG CCCGGAAGTT CCGGCGGAAG ACCTGATCTG GCAGGACGTG ATCCCGGCTG TCGACCACAA GCTGGTTGAC  GAGAATGACG TCGCCGACCT CAAGGGCAAG GTCCTTGCCT CCGGTCTTTC GGTGCAGGAA CTGGTTTCCA CGGCCTGGGC TTCGGCTTCG ACCTTCCGCG GCTCCGACAA GCGCGGCGGT  GCCAATGGTG CCCGCATCCG CCTCGCACCG CAGAAGGATT GGGAAGTCAA CCAGCCGGCC CAACTCGCCA GGGTCCTCTC CGTTCTTGAG GGCATCCAGA AGGACTTCAA CACTGCTCAT  ACCGGCGGCA AGAAGATTTC GCTTGCCGAC CTGATCGTGC TTGCTGGCGC GGCCGGCGTG GAGAAGGCGG CAAAGGCAGG CGGCCACGAT ATCACCGTGC CGTTCACGCC GGGTCGAGCG  GATGCCTCGG AGGCGCAGAC CGACGCTGCG TCTTTCGCGG CGCTCGAACC CCGTGCCGAC GGCTTCCGCA ATTATGTGAG CCGCCGCCGC CGGCAGTTCA TGAAACCGGA AGAGGCTCTG  GTGGATCGGG CGCAGCTGCT GACGCTGACC GCGCCGGAAC TGACCGTGCT CGTCGGCGGC CTGCGTGTGC GTCTTCACCT CCCGTCCGGA GGTTCTGACG AACGACTTCT TCGTCAACCT 
TCTCGACATG GGCACGCAGT GGTCACCCAT GGCCGAAAAA GAAGGCGTCT ACGAAGGGCG CGACCG 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACCATGG ATCAGAAAAG TGACAACGCG GGCAAATGTC CCGTCGCACA TACGGTACCG AAAGGCAGGT CGAACCGCGA CTGGTGGCCG GATCAACTTG ACGTCCAGGT TCTCCACCAG  CATTCCGGTC TTTCCGACCC GATGGGCAAG GCGTTCAACT ACGCCGAGGA GTTCAAGAAG CTCGACCTCG AGGAGCTGAA GAAAGATCTG CACGCGCTGA TGACGGAGTC GCAAGATTGG  TGGCCGGCCG ACTTCGGTCA CTACGGCGGA CTCTTCATCC GCATGGCCTG GCACAGCGCC GGCACCTACC GCATCACTGA CGGCCGCGGA GGCGCCGGTC AGGGCCAGCA GCGCTTCGCA  CCGCTCAACA GCTGGCCGGA TAACGCCAAT CTCGACAAGG CCCGCCGTCT GCTGTGGCCG ATCAAGCAGA AATACGGCAA CAGGATTTCT TGGGCGGATC TGATGATCCT CACCGGCAAC  GTCGCACTTG AATCCATGGG CTTCCAGACC TTCGGTTTTG CCGGCGGCCG TGCCGACGTG TGGGAACCTC AGGAACTGTT CTGGGGACCG GAGGGCACTT GGCTGGGCGA CGAGCGCTAT  AGCGGCGAAC GGCAATTGGA CGAGCCGCTC GCCGCCGTGC AGATGGGTCT CATCTATGTC AATCCTGAAG GTCCGAACGG CAATCCCGAT CCGGTTGCTG CCGCGCGTGA GATCCGCGAG  ACCTTCGCCC GCATGGCGAT GAACGACGAA GAGACCGTGG CGCTGATCGC CGGTGGCCAC ACCTTCGGCA AGACCCATGG CGCCGGCGAT CCGTCGTTCA TCGGTCCGGA CCCGGAAGGT  GGTGCGATCG AGGATCAGGG TCTCGGCTGG AAGAGCACCT TCGGCACCGG TGTAGGCAAG GACGCGATCA CGGGCGGGCC GGAGGTGACC TGGTCTCAGA CGCCGACCCG GTGGAGCAAC  TATTTCTTCG AGAATCTTTT CAACTACGAA TGGGAGCTGA CCAAGAGCCC GGCTGGTGCC CATCAATGGA AGGCGAAGAA TGCCGATGCC TCCATCCCGG ACGCCTTTGA CGCGTCCAAG  AAACATGTTC CGACCATGCT GACCACCGAT CTGTCGCTCC GCTTCGACCC GATTTACGAG AAGATCTCGC GCCGCTTCCT CGAAAACCCG GATCAGTTCG CCGACGCCTT CGCCCGCGCC  TGGTTCAAGT TGACCCACCG CGACATGGGT CCGAAGGTCC GCTATCTCGG CCCGGAAGTT CCGGCGGAAG ACCTGATCTG GCAGGACGTG ATCCCGGCTG TCGACCACAA GCTGGTTGAC  GAGAATGACG TCGCCGACCT CAAGGGCAAG GTCCTTGCCT CCGGTCTTTC GGTGCAGGAA CTGGTTTCCA CGGCCTGGGC TTCGGCTTCG ACCTTCCGCG GCTCCGACAA GCGCGGCGGT  GCCAATGGTG CCCGCATCCG CCTCGCACCG CAGAAGGATT GGGAAGTCAA CCAGCCGGCC CAACTCGCCA GGGTCCTCTC CGTTCTTGAG GGCATCCAGA AGGACTTCAA CACTGCTCAT  ACCGGCGGCA AGAAGATTTC GCTTGCCGAC CTGATCGTGC TTGCTGGCGC GGCCGGCGTG GAGAAGGCGG CAAAGGCAGG CGGCCACGAT ATCACCGTGC CGTTCACGCC GGGTCGAGCG  GATGCCTCGG AGGCGCAGAC CGACGCTGCG TCTTTCGCGG CGCTCGAACC CCGTGCCGAC GGCTTCCGCA ATTATGTGAG CCGCCGCCGC CGGCAGTTCA TGAAACCGGA AGAGGCTCTG  GTGGATCGGG CGCAGCTGCT GACGCTGACC GCGCCGGAAC TGACCGTGCT CGTCGGCGGC CTGCGTGTGC GTCTTCACCT CCCGTCCGGA GGTTCTGACG AACGACTTCT TCGTCAACCT 
TCTCGACATG GGCACGCAGT GGTCACCCAT GGCCGAAAAA GAAGGCGTCT ACGAAGGGCG CGACCG 

Retrieve as FASTA