Entry information : VchCP01_AS238
Entry ID 3776
Creation 2006-08-30 (Filippo Passardi)
Last sequence changes 2016-01-06 (Achraf Jemmat)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2016-01-07 (Christophe Dunand)
Peroxidase information: VchCP01_AS238
Name VchCP01_AS238
Class Catalase peroxidase     [Orthogroup: CP001]*
Taxonomy Bacteria Proteobacteria Gammaproteobacteria Vibrionaceae Vibrio
Organism Vibrio cholerae    [TaxId: 666 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VchCP01_AS238
start..stop
S start..stop
VchCP01_SG20 310 3e-110 10..159 28..177
VchCP01_AS468 306 6e-109 10..159 26..175
VchCP01_N16961 313 1e-104 10..159 194..343
VchCP01_PG030 288 2e-102 10..149 16..155
Literature and cross-references VchCP01_AS238
Literature Garg,P et al., Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral
gene transfer & founder flush. Emerging Infect. Dis. 9 (7), 810-814 (2003)
Protein ref. GenBank:   AAP83968.1 UniProtKB:   Q7WSX7
DNA ref. GenBank:   AY297848.1 [Fragment]
Protein sequence: VchCP01_AS238
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   159
PWM (Da):   %s   17350.52  
PI (pH):   %s   6
Sequence
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Send to Peroxiscan
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KKTFTGVLRK EWLAKSGGEN SRYSGQRDLE NPLAAVMMGL IYVNPEGVDG NPDPLKTAQD MRVTFARMAM NDEETVALTA GGHTVGKAHG NGKASNLGPD PEGAELHEQG LGWNNHTSRG 
IGRNTVTSGI EGAWTTHPTR WDNEYFYLLL SYEWQLTKS 

Retrieve as FASTA  
Remarks Partial sequence from genomic, identical to VchCP01_SG20, VchCP01_N16961 and VchCP01_PG030.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAAAAGACAT TTACTGGGGT TCTGCGAAAA GAGTGGCTTG CCAAATCTGG CGGTGAAAAT AGCCGTTACT CTGGTCAGCG CGATCTCGAA AACCCACTTG CGGCCGTCAT GATGGGGCTT  ATCTACGTCA ACCCAGAAGG TGTGGATGGA AACCCAGATC CACTCAAAAC GGCGCAAGAC ATGCGTGTCA CTTTTGCTCG CATGGCAATG AATGACGAAG AGACCGTTGC TCTGACGGCT  GGCGGCCATA CGGTGGGTAA AGCGCACGGT AATGGCAAAG CTTCTAACCT TGGCCCTGAT CCTGAAGGCG CTGAACTGCA CGAACAAGGC TTAGGTTGGA ACAACCACAC CAGCCGTGGG 
ATTGGTCGAA ACACCGTCAC CAGTGGTATT GAAGGTGCAT GGACCACTCA CCCAACCCGT TGGGATAACG AATATTTCTA CTTACTGCTC AGCTATGAAT GGCAGCTCAC TAAGAGC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAAAAGACAT TTACTGGGGT TCTGCGAAAA GAGTGGCTTG CCAAATCTGG CGGTGAAAAT AGCCGTTACT CTGGTCAGCG CGATCTCGAA AACCCACTTG CGGCCGTCAT GATGGGGCTT  ATCTACGTCA ACCCAGAAGG TGTGGATGGA AACCCAGATC CACTCAAAAC GGCGCAAGAC ATGCGTGTCA CTTTTGCTCG CATGGCAATG AATGACGAAG AGACCGTTGC TCTGACGGCT  GGCGGCCATA CGGTGGGTAA AGCGCACGGT AATGGCAAAG CTTCTAACCT TGGCCCTGAT CCTGAAGGCG CTGAACTGCA CGAACAAGGC TTAGGTTGGA ACAACCACAC CAGCCGTGGG 
ATTGGTCGAA ACACCGTCAC CAGTGGTATT GAAGGTGCAT GGACCACTCA CCCAACCCGT TGGGATAACG AATATTTCTA CTTACTGCTC AGCTATGAAT GGCAGCTCAC TAAGAGC 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAAAAGACAT TTACTGGGGT TCTGCGAAAA GAGTGGCTTG CCAAATCTGG CGGTGAAAAT AGCCGTTACT CTGGTCAGCG CGATCTCGAA AACCCACTTG CGGCCGTCAT GATGGGGCTT  ATCTACGTCA ACCCAGAAGG TGTGGATGGA AACCCAGATC CACTCAAAAC GGCGCAAGAC ATGCGTGTCA CTTTTGCTCG CATGGCAATG AATGACGAAG AGACCGTTGC TCTGACGGCT  GGCGGCCATA CGGTGGGTAA AGCGCACGGT AATGGCAAAG CTTCTAACCT TGGCCCTGAT CCTGAAGGCG CTGAACTGCA CGAACAAGGC TTAGGTTGGA ACAACCACAC CAGCCGTGGG 
ATTGGTCGAA ACACCGTCAC CAGTGGTATT GAAGGTGCAT GGACCACTCA CCCAACCCGT TGGGATAACG AATATTTCTA CTTACTGCTC AGCTATGAAT GGCAGCTCAC TAAGAGC 

Retrieve as FASTA