Entry information : VchCP01_PG030
Entry ID 3777
Creation 2006-08-29 (Filippo Passardi)
Last sequence changes 2016-01-06 (Achraf Jemmat)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2016-01-07 (Christophe Dunand)
Peroxidase information: VchCP01_PG030
Name VchCP01_PG030
Class Catalase peroxidase     [Orthogroup: CP001]*
Taxonomy Bacteria Proteobacteria Gammaproteobacteria Vibrionaceae Vibrio
Organism Vibrio cholerae    [TaxId: 666 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VchCP01_PG030
start..stop
S start..stop
VchCP01_SG20 320 1e-114 1..155 13..167
VchCP01_AS468 318 1e-113 1..154 11..164
VchCP01_N16961 324 6e-109 1..155 179..333
VchCP01_AM64 290 7e-103 1..142 12..153
Literature and cross-references VchCP01_PG030
Literature Garg,P et al., Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer & founder flush. Emerging Infect. Dis. 9 (7), 810-814 (2003)
Protein ref. GenBank:   AAP83970.1 UniProtKB:   Q7WSX5
DNA ref. GenBank:   AY297851.1 [Fragment]
Protein sequence: VchCP01_PG030
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   155
PWM (Da):   %s   16943.05  
PI (pH):   %s   4.7
Sequence
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Send to Peroxiscan
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EDIWHPEKDI YWGSEKEWLA KSGGENSRYS GQRDLENPLA AVMMGLIYVN PEGVDGNPDP LKTAQDMRVT FARMAMNDEE TVALTAGGHT VGKAHGNGKA SNLGPDPEGA ELHEQGLGWN 
NHTSRGIGRN TVTSGIEGAW TTHPTRWDNE YFYLL 

Retrieve as FASTA  
Remarks Partial sequence from genomic, identical to VchCP01_SG20, VchCP01_AS468, VchCP01_N16961 and VchCP01_AS238.
DNA
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GAAGACATCT GGCACCCAGA AAAAGACATT TACTGGGGTT CTGAAAAAGA GTGGCTTGCC AAATCTGGCG GTGAAAATAG CCGTTACTCT GGTCAGCGCG ATCTCGAAAA CCCACTTGCG  GCCGTCATGA TGGGGCTTAT CTACGTCAAC CCAGAAGGTG TGGATGGAAA CCCAGATCCA CTCAAAACGG CGCAAGACAT GCGTGTCACT TTTGCTCGCA TGGCAATGAA TGACGAAGAG  ACCGTTGCTC TGACGGCTGG CGGCCATACG GTGGGTAAAG CGCACGGTAA TGGCAAAGCT TCTAACCTTG GCCCTGATCC TGAAGGCGCT GAACTGCACG AACAAGGCTT AGGTTGGAAC 
AACCACACCA GCCGTGGGAT TGGTCGAAAC ACCGTCACCA GTGGTATTGA AGGTGCATGG ACCACTCACC CAACCCGGTG GGATAACGAA TATTTCTACT TACTG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAAGACATCT GGCACCCAGA AAAAGACATT TACTGGGGTT CTGAAAAAGA GTGGCTTGCC AAATCTGGCG GTGAAAATAG CCGTTACTCT GGTCAGCGCG ATCTCGAAAA CCCACTTGCG  GCCGTCATGA TGGGGCTTAT CTACGTCAAC CCAGAAGGTG TGGATGGAAA CCCAGATCCA CTCAAAACGG CGCAAGACAT GCGTGTCACT TTTGCTCGCA TGGCAATGAA TGACGAAGAG  ACCGTTGCTC TGACGGCTGG CGGCCATACG GTGGGTAAAG CGCACGGTAA TGGCAAAGCT TCTAACCTTG GCCCTGATCC TGAAGGCGCT GAACTGCACG AACAAGGCTT AGGTTGGAAC 
AACCACACCA GCCGTGGGAT TGGTCGAAAC ACCGTCACCA GTGGTATTGA AGGTGCATGG ACCACTCACC CAACCCGGTG GGATAACGAA TATTTCTACT TACTG 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAAGACATCT GGCACCCAGA AAAAGACATT TACTGGGGTT CTGAAAAAGA GTGGCTTGCC AAATCTGGCG GTGAAAATAG CCGTTACTCT GGTCAGCGCG ATCTCGAAAA CCCACTTGCG  GCCGTCATGA TGGGGCTTAT CTACGTCAAC CCAGAAGGTG TGGATGGAAA CCCAGATCCA CTCAAAACGG CGCAAGACAT GCGTGTCACT TTTGCTCGCA TGGCAATGAA TGACGAAGAG  ACCGTTGCTC TGACGGCTGG CGGCCATACG GTGGGTAAAG CGCACGGTAA TGGCAAAGCT TCTAACCTTG GCCCTGATCC TGAAGGCGCT GAACTGCACG AACAAGGCTT AGGTTGGAAC 
AACCACACCA GCCGTGGGAT TGGTCGAAAC ACCGTCACCA GTGGTATTGA AGGTGCATGG ACCACTCACC CAACCCGGTG GGATAACGAA TATTTCTACT TACTG 

Retrieve as FASTA