Entry information : ZmPrx03_Du101 (pox3)
Entry ID 3817
Creation 2006-08-30 (Christophe Dunand)
Last sequence changes 2011-02-15 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-02-15 (Christophe Dunand)
Peroxidase information: ZmPrx03_Du101 (pox3)
Name (synonym) ZmPrx03_Du101 (pox3)
Class Class III peroxidase     [Orthogroup: Prx002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Zea
Organism Zea mays    [TaxId: 4577 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ZmPrx03_Du101
start..stop
S start..stop
ZmPrx03_B73 725 0 1..357 4..360
ZmPrx03_Lan496 725 0 1..357 1..357
ZmPrx03_F66 724 0 1..357 1..357
ZmPrx03_Wis93 723 0 1..357 1..357
Literature and cross-references ZmPrx03_Du101 (pox3)
Literature Guillet-Claude,C., Birolleau-Touchard,C., Manicacci,D., Rogowsky,P.M., Rigau,J., Murigneux,A., Martinant,J.P. and Barriere,Y. Nucleotide diversity of the ZmPox3 maize peroxidase gene: relationships between a MITE insertion in exon 2 and variation in forage maize digestibility. BMC Genet. 5 (1), 19 (2004
Protein ref. UniProtKB:   Q6RFK0
DNA ref. GenBank:   AY500795 [3' end]
Protein sequence: ZmPrx03_Du101 (pox3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   357 (336)
PWM (Da):   %s   38211.34 (35926.1)  
PI (pH):   %s   6.96 (5.73) Peptide Signal:   %s   cut: 22 range:22-357
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TKRHCLRFTT VLATTLLSAT AACLDVGFYD RTCPTAETIV QQTVAAAFRN NSGVAPALIR MHFHDCFVRG CDGSVLIDTV GNLTAEKDAP PNNPSLRFFD VVDRAKAALE AQCPGVVSCA  DVLAFAARDS VVLSGGLGYQ VPAGRRDGRI SNDTEALNNL PPPFFNATEL ADRFASKNLT IEDLVVLSGA HTIGVSHCSG FAGPTDLNGP VDRLYNFSSP DGIDPTLSKA YAFLLKSICP 
ANTSQFFPNT TVFMDLITPE RFDNKYYVGL TNNLGLFKSD VALLTNATMK ALVDSFVRSE ATFRTKFARS MIKMGQIEVL TGTQGEIRRN CRVINPVSAT DDVVLARPSG FTGVAAS 

Retrieve as FASTA  
Remarks Partial sequence from Genomic (introns 1 and 3'). Short PS is missing. Relationships with variation in cell wall digestibility. Also present in different cultivars with a MITE seq in the exon 2: Du101 (AY500795), F288 (AY500802), F4 (AY500803), Quebec28 (AY500781, AY508159).
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GACGAAGCGG CACTGCTTGC GCTTCACCAC CGTCCTGGCG ACGACGCTTC TCTCGGCCAC CGCCGCCTGC CTCGACGTCG GCTTCTACGA CAGGACATGC CCCACTGCCG AGACCATCGT  GCAGCAGACC GTGGCGGCCG CGTTCAGGAA CAACTCCGGC GTCGCTCCGG CGCTGATCCG CATGCACTTC CATGACTGCT TTGTCAGGGT AATTAAGCAC ACTGCACGCA CGCATGCATG  TAGCTAGAAG ACATGCTGTT TTTTTTTTCT CTCCACACGA GCGAGTGACG TAAGTACGCG CGCGGGCTCT AACTCTAAAC TACTTGCTTG CAGGGCTGCG ATGGCTCGGT GCTGATCGAC  ACGGTGGGCA ACCTGACGGC GGAGAAGGAC GCGCCACCCA ACAACCCCAG CCTCCGGTTC TTCGACGTGG TCGACCGTGC CAAGGCGGCA CTGGAGGCTC AGTGCCCCGG CGTGGTCTCC  TGCGCCGACG TGCTCGCCTT CGCGGCCAGG GACAGCGTCG TGCTCTCCGG CGGCCTCGGC TACCAGGTGC CGGCCGGACG CCGTGACGGG CGGATATCCA ATGACACCGA AGCCCTCAAC  AACCTGCCTC CGCCGTTCTT CAACGCCACC GAGCTGGCAG ACAGGTTCGC CTCCAAGAAC CTCACTATCG AGGACCTGGT CGTGCTCTCC GGCGCGCACA CCATCGGCGT CTCGCACTGC  AGCGGCTTCG CCGGCCCGAC AGACCTGAAC GGCCCCGTTG ACCGGCTCTA CAACTTCAGC TCGCCTGACG GGGTAGGGGC ATCGTCTGTC ACCTCGCTCT CTCTGTCTGT CTGTGCAAAA  CCTTGAATGC GAAAAAAAGA TGACCCCCGG TTATTACTTA CCATGCATTG CTGTGGTGTA CAGATTGACC CGACGCTGAG CAAAGCCTAC GCATTTCTTC TCAAGAGCAT CTGCCCGGCC  AACACCAGCC AGTTCTTCCC GAACACGACG GTGTTCATGG ACCTCATCAC GCCGGAAAGG TTTGACAACA AGTACTACGT CGGCCTGACC AACAACCTGG GCCTCTTCAA GTCAGACGTG  GCGCTGCTGA CCAACGCGAC GATGAAGGCC CTGGTCGACT CCTTCGTGCG CAGCGAGGCG ACTTTCAGGA CCAAGTTTGC CAGGTCCATG ATCAAGATGG GGCAGATCGA GGTGCTGACG  GGGACGCAGG GCGAGATCAG GCGCAACTGC AGGGTCATCA ACCCCGTTAG TGCCACCGAT GATGTCGTCC TCGCCCGCCC ATCAGGATTC ACTGGAGTGG CTGCGAGCTA GCTAACCAAC 
TGTCGGTTCA TGCACATGCA TTGTGCAGTG TGTGATGTCT AGTGTGAGTT GATGTGTGAA ATTGTAATAA GTAATGAGCA GATTATCTTG GTAAGCTCGC TTGTTACTGT GGCAAA 

Retrieve as FASTA