Entry information : BnPrx54-2_other (podA / BnPrx54-2)
Entry ID 3926
Creation 2006-09-05 (Christophe Dunand)
Last sequence changes 2012-04-25 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-04-25 (Christophe Dunand)
Peroxidase information: BnPrx54-2_other (podA / BnPrx54-2)
Name (synonym) BnPrx54-2_other (podA / BnPrx54-2)
Class Class III peroxidase     [Orthogroup: Prx006]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnPrx54-2_other
start..stop
S start..stop
BnPrx54-3_other 496 2e-180 1..252 71..322
BrPrx54-1Aa_other 495 3e-179 1..253 71..323
BnPrx54-1_other 491 2e-177 1..253 71..323
BoPrx54-1Ca_other 467 4e-169 9..253 2..246
Literature and cross-references BnPrx54-2_other (podA / BnPrx54-2)
Literature REFERENCE 1 Regalado,C et al., Cloning a cDNA encoding a turnip peroxidase and structural analysis of deduced protein
Unpublished.

REFERENCE 2 Park,Y.S., Kwak,J.M., Kwon,O.Y., Kim,Y.S., Lee,D.S., Cho,M.J., Lee ,H.H. and Nam,H.G. Generation of expressed sequence tags of random root cDNA clones of Brassica napus by single-run partial sequencing. Plant Physiol. 103, 359-370 (1993).
Protein ref. UniProtKB:   Q6QZP3
mRNA ref. GenBank:   AY521529 [Fragment]
Protein sequence: BnPrx54-2_other (podA / BnPrx54-2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   253
PWM (Da):   %s   26303.86  
PI (pH):   %s   4.19
Sequence
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Send to Peroxiscan
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HFHDCFVNGC DGSLLLDDSA NIQSEKNAVP NPNSTRGFSV VDDIKTALEN ACPGIVSCSD ILALASEASV SLAGGPTWAV LLGRKDGLTA NLSGANTGVP SPFEGITNIT AKFTAVGLNT  TDVVVLSGAH TFGRAACATF NNRLFNFNGT GSPDPTLNST LLSSLQQVCP QNGSASVVTN LDLSTPDAFD NNYFTNLQSN NGLLQSDQEL LSDTGSPTIP IVTSFASNQT QFFEAFALSM 
IKMGNISPFT KQS 

Retrieve as FASTA  
Remarks Parrial sequence from 1 cDNA. (PodA and PodC have been merged in the same UniGene Bna.2291 and TIGR TC1231). Cultivar="purple top white globe".
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CATTTTCATG ACTGCTTCGT GAACGGTTGC GACGGCTCGC TCTTGCTAGA CGACAGCGCA AACATCCAGA GCGAGAAGAA CGCTGTACCC AACCCAAACT CAACGAGAGG ATTCAGTGTT  GTGGATGATA TCAAAACTGC CCTCGAGAAT GCTTGTCCCG GCATCGTCTC TTGCTCTGAC ATTCTAGCTC TTGCCTCTGA GGCCTCCGTG TCTTTGGCAG GAGGGCCAAC ATGGGCTGTG  TTACTAGGAC GAAAAGATGG TCTCACCGCG AACCTGTCTG GGGCGAACAC GGGCGTTCCA TCTCCTTTTG AAGGCATCAC CAACATCACA GCTAAATTTA CAGCTGTCGG GCTGAATACA  ACCGATGTAG TAGTCTTATC TGGAGCCCAT ACGTTTGGAC GTGCAGCTTG CGCAACCTTT AACAATAGAC TATTCAACTT CAATGGGACA GGAAGTCCAG ACCCGACTCT AAACTCAACA  CTTCTCAGCA GTCTTCAACA GGTATGTCCT CAAAACGGCA GCGCATCAGT AGTCACCAAT CTTGATCTGA GCACACCTGA TGCTTTCGAT AACAATTACT TCACCAACCT TCAGAGCAAC  AATGGTCTTC TTCAGTCAGA CCAAGAACTG TTATCTGACA CCGGTTCTCC CACCATCCCT ATTGTTACTT CCTTTGCAAG TAACCAAACT CAGTTTTTCG AGGCGTTTGC TCTGTCCATG 
ATCAAAATGG GGAACATTAG TCCGTTCACA AAACAATCAT GA 

Retrieve as FASTA