Entry information : PmeAPx01_CoosBay (Pm-APx22)
Entry ID 3929
Creation 2006-09-13 (Filippo Passardi)
Last sequence changes 2006-09-13 (Filippo Passardi)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2011-12-01 (Qiang Li)
Peroxidase information: PmeAPx01_CoosBay (Pm-APx22)
Name (synonym) PmeAPx01_CoosBay (Pm-APx22)
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Pseudotsuga
Organism Pseudotsuga menziesii (Douglas-fir)    [TaxId: 3357 ]
Cellular localisation Cytosolic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmeAPx01_CoosBay
start..stop
S start..stop
PmeAPx01_Cascade 184 4e-63 1..91 1..91
PmeAPx01_TwinHarbors 183 9e-63 1..91 1..91
PmeAPx01_Springfield 183 2e-62 1..90 1..90
PgAPx02 186 2e-61 1..91 159..249
Literature and cross-references PmeAPx01_CoosBay (Pm-APx22)
Literature Krutovsky,K.V. and Neale,D.B.

Nucleotide diversity and linkage disequilibrium in adaptive trait
related candidate genes in Douglas-fir

Unpublished (14-DEC-2004)
Protein ref. UniProtKB:   Q5MEF6
DNA ref. GenBank:   56481264
Protein sequence: PmeAPx01_CoosBay (Pm-APx22)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   91
PWM (Da):   %s   10069.92  
PI (pH):   %s   4.52
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

SGAHTLGRCH KERSGFEGAW TSNPLIFDNS YFKELLSGEK EGLLQLPSDK ALLEDPVFRS YVEKYAADED AFFADYAEAH LKLSELGFAE E 

Retrieve as FASTA  
Remarks Partial sequence from genomic DNA. 5'end is missing. Variety menziesii. The name next to APx refers to the breeding zone of the Douglas-fir. Slight differences compared to other PmeAPx01 (genetic adaptation to environmental conditions). See also Krutovsky and Neale, Genetics (2005), pp. 2029-2041.