Entry information : PmeAPx01_Springfield (Pm-APx19)
Entry ID 3942
Creation 2006-09-22 (Filippo Passardi)
Last sequence changes 2006-09-22 (Filippo Passardi)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2011-12-01 (Qiang Li)
Peroxidase information: PmeAPx01_Springfield (Pm-APx19)
Name (synonym) PmeAPx01_Springfield (Pm-APx19)
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Pseudotsuga
Organism Pseudotsuga menziesii (Douglas-fir)    [TaxId: 3357 ]
Cellular localisation Cytosolic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmeAPx01_Springfield
start..stop
S start..stop
PmeAPx01_Cascade 186 6e-64 1..93 1..93
PmeAPx01_TwinHarbors 185 2e-63 1..93 1..93
PmeAPx01_CoosBay 183 2e-62 1..90 1..90
PgAPx02 184 7e-61 1..90 159..248
Literature and cross-references PmeAPx01_Springfield (Pm-APx19)
Literature Krutovsky,K.V. and Neale,D.B. Nucleotide diversity and linkage disequilibrium in adaptive trait related candidate genes in Douglas-fir Unpublished (14-DEC-2004)
Protein ref. UniProtKB:   Q5MEF9
DNA ref. GenBank:   AY832491
Protein sequence: PmeAPx01_Springfield (Pm-APx19)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   93
PWM (Da):   %s   10290.01  
PI (pH):   %s   4.43
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

SGAHTLGRCH KERSGFEGAW TSNPLIFDNS YFKELLSGEK EGLLQLPSDK ALLEDPVFRS YVEKYAADED AFFADYAEAH LKLSELGFAE GYQ 

Retrieve as FASTA  
Remarks Partial sequence from genomic DNA. 5' end is missing. Variety menziesii. The name next to APx refers to the breeding zone of the Douglas-fir. Slight differences compared to other PmeAPx01 (genetic adaptation to environmental conditions). See also Krutovsky and Neale, Genetics (2005), pp. 2029-2041.