Entry information : PmeAPx01_TwinHarbors (Pm-APx11)
Entry ID 3959
Creation 2006-09-22 (Filippo Passardi)
Last sequence changes 2006-09-22 (Filippo Passardi)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2011-12-01 (Qiang Li)
Peroxidase information: PmeAPx01_TwinHarbors (Pm-APx11)
Name (synonym) PmeAPx01_TwinHarbors (Pm-APx11)
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Pinaceae Pseudotsuga
Organism Pseudotsuga menziesii (Douglas-fir)    [TaxId: 3357 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmeAPx01_TwinHarbors
start..stop
S start..stop
PmeAPx01_Cascade 188 1e-64 1..93 1..93
PmeAPx01_Springfield 185 2e-63 1..93 1..93
PmeAPx01_CoosBay 183 9e-63 1..91 1..91
PgAPx02 185 3e-61 1..91 159..249
Literature and cross-references PmeAPx01_TwinHarbors (Pm-APx11)
Literature Krutovsky,K.V. and Neale,D.B.

Nucleotide diversity and linkage disequilibrium in adaptive trait
related candidate genes in Douglas-fir

Unpublished (14-DEC-2004)
Protein ref. UniProtKB:   Q5MEG7
DNA ref. GenBank:   56481242
Protein sequence: PmeAPx01_TwinHarbors (Pm-APx11)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   93
PWM (Da):   %s   10390.03  
PI (pH):   %s   4.35
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

SGAHTLGRCH KERSGFEGAW TSNPLIFDNS YFKELLSGER EGLLQLPSDK ALLEDPVFRS YVEKYAADED AFFADYAEAH LKLSELGFAE EYQ 

Retrieve as FASTA  
Remarks Partial sequence from genomic DNA. 5'end is mising. Variety menziesii. The name next to APx refers to the breeding zone of the Douglas-fir. Slight differences compared to other PmeAPx01 (genetic adaptation to environmental conditions). See also Krutovsky and Neale, Genetics (2005), pp. 2029-2041. Identical sequences (same SwissProt accession) in NCBI AY832498 (Coos Bay, Pm-APX013d2), AY832487 (Longview) and AY832475 (Cascade).