Entry information : AtAPx[P]08 (At1g33660)
Entry ID 3963
Creation 2007-04-12 (Christophe Dunand)
Last sequence changes 2007-04-12 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Qiang Li
Last annotation changes 2012-05-21 (Qiang Li)
Peroxidase information: AtAPx[P]08 (At1g33660)
Name (synonym) AtAPx[P]08 (At1g33660)
Class Ascorbate peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis thaliana    [TaxId: 3702 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtAPx[P]08
start..stop
S start..stop
AlyAPx[P]01-1 191 1e-64 1..125 1..124
AhalAPx02 192 4e-63 1..125 41..164
AtAPx01 191 9e-63 1..125 41..164
AlyAPx01 191 1e-62 1..125 41..164
Literature and cross-references AtAPx[P]08 (At1g33660)
Literature Theologis A. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature 408:816-820(2000).

DNA ref. Phytozome 12:   Chr1 (12198321..12197704)
Cluster/Prediction ref. UniGene:   At.51907
Omic ref. ePlant:   At1g33660 TAIR:   At1g33660
Protein sequence: AtAPx[P]08 (At1g33660)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   130
PWM (Da):   %s   14194.31  
PI (pH):   %s   7.78
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
WHSTGTYDCQ SRTGGPFRTM RFDAEQVNGA NYGIQIALRL LDPIR*HSLL SLLLIDFRDL SGAVAVEVTG GPKIHFHP*R EDKPHTPPEG RLPDATKGFD LLRDVFAKRM GLSDKDIVAL 
SGSHTPISPS QS 

Retrieve as FASTA  
Remarks Pseudogene sequence from genomic (chromo 1), 1 mRNA. Two frameshifts and two STOP codons in the sequence.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGGCACTCTA CTGGAACTTA CGATTGTCAG TCAAGAACTG GAGGTCCATT CAGAACAATG AGGTTTGATG CAGAGCAAGT TAATGGAGCC AACTATGGTA TTCAAATTGC TCTTAGGTTG  CTGGACCCCA TCAGGTAGCA TTCCCTACTA TCTCTCTTGC TGATTGATTT TAGATTTTTG AAAAGTTCTA ATTTGTTGAC GGTGATAACT TTAGGGTTTG GATTCTAACT TACAATGTCT  TTTTGGTGAG AAATTGATCT TTCAGGTGCT GTGGCCGTTG AAGTTACTGG TGGCCCTAAA ATTCATTTCC ACCCTTGAAG AGAGGTTAAT CATTCCTGAG AGTGTGTGTT CTGCTTTCTT  TGTTGACATG GCTGATTGAT AATTTAGACA TTCTCTCAAT ACTTGTAATA CTGAAACGCT GTGGGACTTG ATTGTCTGTT TCTAACATGC ATATCTTGCT TTCAGGACAA GCCCCATACA  CCTCCTGAGG GTCGTCTCCC TGATGCTACA AAAGGTTTTG ATCTGTTGAG AGATGTATTT GCTAAGCGGA TGGGCTTGTC TGACAAGGAC ATTGTCGCTT TATCTGGATC CCACACTCCT 
ATTTCTCCAT CTCAGAGC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGGCACTCTA CTGGAACTTA CGATTGTCAG TCAAGAACTG GAGGTCCATT CAGAACAATG AGGTTTGATG CAGAGCAAGT TAATGGAGCC AACTATGGTA TTCAAATTGC TCTTAGGTTG  CTGGACCCCA TCAGGTAGCA TTCCCTACTA TCTCTCTTGC TGATTGATTT TAGAGATCTT TCAGGTGCTG TGGCCGTTGA AGTTACTGGT GGCCCTAAAA TTCATTTCCA CCCTTGAAGA  GAGGACAAGC CCCATACACC TCCTGAGGGT CGTCTCCCTG ATGCTACAAA AGGTTTTGAT CTGTTGAGAG ATGTATTTGC TAAGCGGATG GGCTTGTCTG ACAAGGACAT TGTCGCTTTA 
TCTGGATCCC ACACTCCTAT TTCTCCATCT CAGAGC 

Retrieve as FASTA