Entry information : RnoPGHS02-B (Cox2b)
Entry ID 3976
Creation 2006-10-30 (Christophe Dunand)
Last sequence changes 2006-10-30 (Christophe Dunand)
Sequence status complete
Reviewer Filippo Passardi
Last annotation changes 2012-05-23 (Christophe Dunand)
Peroxidase information: RnoPGHS02-B (Cox2b)
Name (synonym) RnoPGHS02-B (Cox2b)
Class H synthase    [Orthogroup: PGHS001]
Taxonomy Eukaryota Metazoa Chordata Mammalia Muridae Rattus
Organism Rattus norvegicus (Norway rat)    [TaxId: 10116 ]
Cellular localisation N/D
Tissue type Macrophage/monocyte
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RnoPGHS02-B
start..stop
S start..stop
RnoPGHS02-A 646 0 1..325 1..325
ShiPGHS02 630 0 1..325 1..325
CfaPGHS02 622 0 1..325 1..325
OcuPGHS02 610 0 15..325 15..325
Literature and cross-references RnoPGHS02-B (Cox2b)
Literature Ye D.Y., Wan J.Y., Wu P.Identification and cloning of COX-2b,a novel cyclooxygenase-2 splice variant in rat macrophage. Tong Ji Yi Ke Da Xue Xue Bao 0:0-0(2002).
Protein ref. UniProtKB:   Q8CIP1
mRNA ref. GenBank:   AY157736.1
Cluster/Prediction ref. UniGene:   Rn.44369
Protein sequence: RnoPGHS02-B (Cox2b)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (313)
PWM (Da):   %s   37918.96 (36136.1)  
PI (pH):   %s   8.21 (8.16) Peptide Signal:   %s   cut: 18 range:18-330
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MLFRAVLLCA CPGLSHAANP CCSNPCQNRG ECMSIGFDQY KCDCTRTGFY GENCTTPRFL TRIKLPLKPT PNTVHYILTH FKGVWNIVNN IPFLRIQSMR YVLTSRSHLI DSPPTYNVHY  GYKSWEAFSN LSYYTRALPP VADDCPTPMG VKGNKELPDS KEVLEKVLLR REFIPDPQGT NMMFAFFAQH FTHQFFKTDQ KRGPGFTRGL GHGVDLNHVY GETLDRQHKL RLFQDGKLKY 
QVIGGEVYPP TVKDTQVDMI YPPHVPEHLR FAVGQEVFGL VPGLMMYATI WLREHNRVCD ILKQEHPEWD DERLFQTSRL ILIGEQERNE 

Retrieve as FASTA  
Remarks Complete sequence from cDNA and 21 ESTs. Splicing variant of RnoPGHS02-A.