Entry information : CloPrx01
Entry ID 3991
Creation 2006-09-21 (Filippo Passardi)
Last sequence changes 2006-09-21 (Filippo Passardi)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2010-04-30 (Christophe Dunand)
Peroxidase information: CloPrx01
Name CloPrx01
Class Class III peroxidase     [Orthogroup: Prx030]*
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Zingiberaceae Curcuma
Organism Curcuma longa    [TaxId: 136217 ]
Cellular localisation N/D
Tissue type Young leaves
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CloPrx01
start..stop
S start..stop
ZoPrx01 643 0 6..317 1..312
VvPrx38 479 3e-172 21..317 31..327
PtPrx08 475 2e-170 21..317 33..329
EgrPrx44 472 3e-169 21..317 33..331
Literature and cross-references CloPrx01
Literature Ma,X.Q., Koo,H.J., Haller,K.P., Soderlund,C.A. and Gang,D.R.

Comparative Analysis of Expressed Sequence Tags from Different
Organs of Ginger and Turmeric. Insights into Specialized Metabolism
in Traditional Medicinal Plants

Unpublished (2006)
EST ref. GenBank:   DY386189.1   DY386188.1 [3' end]
Protein sequence: CloPrx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317 (301)
PWM (Da):   %s   35165.64 (33436.7)  
PI (pH):   %s   7.11 (6.85) Peptide Signal:   %s   cut: 17 range:17-317
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
VFVILILACW SSPSRGEGVG LTLNFYSKSC PKAEEIVKQE VVKLYNEHGN TAVSWVRNLF HDCMVESCDA SLLLETAGTI LSEQSVDRSF GMRNFKYVNT IKEALERACP ATVSCADIVA  LSAREGVVML GGPFIPMKTG RRDSKQSHAD VTDKSIPNHN DSMSVVLSRF KSIGIDAERT VALLGAHSVG RVHCVNLVGR LYPTVDPTFD PEYAKYVLNR CPSPNPDPEA VLYSRNDRET 
PMIIDNMYYK NLLNHKGLLK VDQQLLSYPA TAQFVKLMAA DNSYFYSQFA KAMLLMSENN PLTGNEGEIR RDCRFVN 

Retrieve as FASTA  
Remarks Partial sequence from 2 ESTs. Lacks small part of PS. Cultivar="Orange Turmeric".
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AGTGTTCGTT ATATTAATCC TTGCATGTTG GAGTTCTCCT TCTAGAGGAG AAGGTGTTGG CCTCACACTA AACTTCTACT CCAAGAGCTG CCCCAAGGCC GAGGAGATTG TTAAGCAAGA  GGTTGTGAAG CTCTACAACG AGCATGGCAA CACAGCTGTG TCTTGGGTCA GGAATCTCTT CCATGACTGC ATGGTCGAGT CTTGTGATGC GTCTTTGTTG CTGGAAACGG CCGGTACCAT  TCTGTCTGAG CAATCAGTTG ATAGGAGCTT TGGCATGAGA AACTTCAAGT ACGTGAACAC CATCAAGGAA GCCCTGGAGA GGGCGTGCCC TGCTACTGTG TCTTGCGCCG ATATAGTTGC  TCTCTCTGCA AGAGAAGGTG TAGTCATGCT TGGAGGTCCA TTCATCCCCA TGAAAACTGG TAGAAGGGAC AGCAAGCAAA GTCACGCAGA CGTGACTGAT AAGTCAATTC CCAACCACAA  TGACTCCATG TCCGTCGTTC TCTCCAGATT CAAATCCATA GGAATCGACG CGGAAAGAAC TGTTGCTCTC TTAGGGGCTC ACTCTGTTGG CCGAGTGCAC TGCGTCAACC TCGTCGGCCG  CCTCTACCCC ACTGTCGACC CGACCTTTGA CCCCGAGTAT GCTAAGTACG TCCTCAATCG CTGTCCGTCA CCGAACCCTG ACCCGGAGGC AGTGCTGTAC TCCCGGAACG ACCGCGAAAC  GCCGATGATC ATTGACAACA TGTACTACAA GAACTTGCTG AATCACAAGG GGCTGCTCAA GGTCGACCAG CAGCTGCTTT CTTACCCAGC CACTGCCCAG TTTGTGAAGC TGATGGCAGC  TGACAACAGC TACTTCTACA GTCAGTTCGC GAAGGCGATG CTGTTGATGT CGGAGAACAA TCCGCTGACC GGGAATGAAG GGGAGATCAG GAGAGACTGC CGGTTCGTCA ACGCTGCTGC 
ATAAGCGCTG CAGGCTGTGT GATAATGTAA CTGCTCTGTG TAATATCGTG TCGAAGTGTA TCAAGTCCTC GTGCCGAATT CGGCACGAG 

Retrieve as FASTA