Entry information : CloPrx06
Entry ID 3997
Creation 2006-09-20 (Christophe Dunand)
Last sequence changes 2006-09-20 (Christophe Dunand)
Sequence status complete
Reviewer Filippo Passardi
Last annotation changes 2010-04-30 (Christophe Dunand)
Peroxidase information: CloPrx06
Name CloPrx06
Class Class III peroxidase    [Orthogroup: Prx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Zingiberaceae Curcuma
Organism Curcuma longa    [TaxId: 136217 ]
Cellular localisation N/D
Tissue type Rhizomes
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CloPrx06
start..stop
S start..stop
VaPrx01 442 1e-156 1..342 1..348
AcPrx06 438 4e-155 8..342 2..341
FvPrx01 431 4e-152 1..345 1..349
PpePrx02 429 2e-151 11..345 16..351
Literature and cross-references CloPrx06
Literature Ma,X.Q., Koo,H.J., Haller,K.P., Soderlund,C.A. and Gang,D.R. Comparative Analysis of Expressed Sequence Tags from Different Organs of Ginger and Turmeric. Insights into Specialized Metabolism in Traditional Medicinal Plants Unpublished (2006)
EST ref. GenBank:   DY392397.1 [5' end]   DY392398.1 [3' end]
Protein sequence: CloPrx06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   349 (323)
PWM (Da):   %s   37582.98 (34885.6)  
PI (pH):   %s   5.63 (5.67) Peptide Signal:   %s   cut: 27 range:27-349
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MASSSSSSSH LILFLFLSFI ASPSEAYNYP PIVNGLSFSF YKSTCPNVEP LVRNFLKQAF KNNIGLAAAL LRLHFHDCFV QGCDGSILLD GSAGGPSEKD APPNLTLRPA AFKAINDIQA  LVTKACGSVV SCADIAALSA RDSVYLSGGP EYLVPLGRRD GLTFATMETV LKFLPSPNSN VTFLIDSLAL LDLNTIDLVT LSGGHSIGVA HCSSFQRRLF PSQDAILSPT FASNLYLTCP 
VEDTINTTVN DIRTPDLFDN KYYVDLVHRE GLFTSDQGLY EDSRTKPIVT SFAKNQALFF ESFVYSMTKM GELSVLTGNK GEIRRNCSAI NSGKNFLGSV VDGDESKAF 

Retrieve as FASTA  
Remarks Complete sequence from 6 ESTs. DY392397, DY394890 (5') and DY392398, DY394889, DY391117, DY391118 (3'). Cultivar="Orange Turmeric".
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAACTCAGAC TCTTTCCAAA TGGCTTCTTC TTCCTCCTCT TCATCTCATC TGATCCTGTT TCTGTTCTTA TCCTTCATTG CTTCTCCTTC AGAAGCTTAT AATTACCCTC CCATAGTAAA  CGGCCTCTCC TTCTCCTTTT ACAAGTCGAC CTGCCCCAAC GTAGAGCCCC TCGTCAGGAA CTTCCTAAAA CAAGCTTTCA AGAATAACAT CGGCCTAGCA GCTGCGCTCC TCCGCCTTCA  CTTCCATGAC TGCTTTGTCC AGGGTTGTGA CGGGTCAATT CTGCTTGATG GTTCTGCTGG CGGGCCGAGC GAGAAAGATG CTCCCCCTAA CTTGACACTC CGACCGGCGG CCTTCAAAGC  CATCAATGAT ATCCAAGCTC TTGTAACCAA GGCTTGTGGC TCGGTCGTCT CTTGTGCTGA CATTGCTGCT CTATCCGCTC GTGACTCCGT CTATTTGTCG GGTGGGCCAG AGTACCTTGT  TCCCCTCGGC CGACGTGACG GTTTGACCTT CGCCACCATG GAGACAGTTC TCAAATTTCT GCCATCCCCA AACTCCAACG TCACCTTCCT CATCGACTCC CTCGCCCTGC TCGACCTGAA  CACCATCGAC CTCGTCACCC TCTCCGGCGG CCACAGCATC GGCGTCGCAC ACTGCTCCTC CTTCCAGAGA CGCCTCTTCC CTTCGCAAGA CGCCATCCTC AGCCCCACCT TCGCCAGCAA  CCTCTACCTG ACGTGCCCCG TCGAGGACAC CATCAACACC ACCGTCAACG ACATCCGCAC ACCAGACCTT TTCGACAACA AGTACTACGT GGACCTGGTG CACCGGGAGG GGCTGTTCAC  CTCGGACCAA GGTCTGTACG AGGATTCCAG GACGAAGCCC ATCGTCACGA GCTTCGCGAA GAACCAGGCT CTGTTCTTTG AAAGCTTCGT GTACTCGATG ACCAAAATGG GGGAGCTAAG  CGTCTTGACC GGGAACAAAG GCGAGATCCG CCGGAATTGC TCCGCCATCA ACTCAGGCAA GAACTTCTTA GGCTCGGTGG TGGATGGGGA TGAGAGCAAG GCGTTCTAAG TAGGCATGAA 
GTTTATAATC TAAGAAATAA AGGCGTTGCA CGTACCTACT GTGAGGATGC ATGCGTGCTT TTGATTAGCA AGTTGTAATA CTTGTCCACT TTGAAAAGTT AAAGTCA 

Retrieve as FASTA