Entry information : PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Entry ID 4026
Creation 2006-10-30 (Nicolas Rouhier)
Last sequence changes 2006-10-30 (Nicolas Rouhier)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Name (synonym) PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation Chloroplastic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrxII05
start..stop
S start..stop
PtrtrPrxII05 429 8e-156 1..218 1..218
PtremPrxII05 425 2e-154 1..218 1..218
LuPrxII16 326 4e-115 1..218 1..228
LuPrxII02 325 1e-114 1..218 1..230
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10266357..10267013 657  
complement(join(10266357..10267013))


exon

Literature and cross-references PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Literature Gama et physiologia plantarum in press.
DNA ref. Phytozome 11:   scaffold_13 (10267013..10266357)
Cluster/Prediction ref. UniGene:   Pth.13170
Omic ref. ePlant:   Potri.013G102100
Protein sequence: PtPrxII05 (POPTR_0013s10250 / PtPrxIIE / Potri.013G102100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   218
PWM (Da):   %s   22926  
PI (pH):   %s   8.04
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAASFSISRL ILSSPTQIST TAATAKSFLS SLPLKPNRLP KPLRTTTRKF STISATISVG DKLPEATLSY FDSEGELQTT TISSLTSGKK SILFAVPGAF TPTCSQKHLP GFVEKSAELK 
SKGVDTIACI SVNDAFVMKA WKEDLGIKDD GVLLLSDGNG DFTKAIGCEL DLSDKPVGLG VRSRRYALLA EDGVVKVLNL EEGGAFTSSG AEDMLKAL 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and 12 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCT CGTTCTCGAT TTCCAGACTC ATCCTCTCCT CTCCAACCCA AATATCCACC ACCGCCGCCA CCGCCAAATC TTTCCTCTCA TCTCTCCCCC TCAAACCCAA CCGCCTACCC  AAGCCCCTGA GAACCACCAC CAGAAAATTC TCCACTATCT CCGCCACCAT TTCTGTCGGG GACAAACTCC CAGAAGCCAC CCTCTCCTAC TTTGACTCCG AAGGAGAGCT CCAAACCACC  ACAATCTCCT CCCTAACATC CGGGAAAAAA TCAATCCTTT TCGCTGTCCC GGGCGCCTTC ACCCCAACAT GCTCCCAGAA ACACCTTCCA GGTTTCGTGG AGAAATCGGC AGAGCTAAAG  TCAAAAGGGG TAGACACAAT CGCGTGTATA TCAGTGAACG ACGCGTTTGT GATGAAAGCA TGGAAGGAGG ATTTGGGGAT AAAAGATGAT GGAGTGCTGC TTTTGTCTGA TGGGAATGGG  GATTTTACAA AGGCAATAGG GTGTGAGTTG GATTTGAGTG ACAAGCCAGT TGGGCTAGGA GTGAGGTCAA GGAGGTATGC GTTGTTGGCT GAAGATGGGG TTGTCAAGGT TCTTAATTTG 
GAGGAAGGTG GAGCTTTTAC TTCCAGTGGA GCTGAGGATA TGCTCAAGGC TCTCTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGCCT CGTTCTCGAT TTCCAGACTC ATCCTCTCCT CTCCAACCCA AATATCCACC ACCGCCGCCA CCGCCAAATC TTTCCTCTCA TCTCTCCCCC TCAAACCCAA CCGCCTACCC  AAGCCCCTGA GAACCACCAC CAGAAAATTC TCCACTATCT CCGCCACCAT TTCTGTCGGG GACAAACTCC CAGAAGCCAC CCTCTCCTAC TTTGACTCCG AAGGAGAGCT CCAAACCACC  ACAATCTCCT CCCTAACATC CGGGAAAAAA TCAATCCTTT TCGCTGTCCC GGGCGCCTTC ACCCCAACAT GCTCCCAGAA ACACCTTCCA GGTTTCGTGG AGAAATCGGC AGAGCTAAAG  TCAAAAGGGG TAGACACAAT CGCGTGTATA TCAGTGAACG ACGCGTTTGT GATGAAAGCA TGGAAGGAGG ATTTGGGGAT AAAAGATGAT GGAGTGCTGC TTTTGTCTGA TGGGAATGGG  GATTTTACAA AGGCAATAGG GTGTGAGTTG GATTTGAGTG ACAAGCCAGT TGGGCTAGGA GTGAGGTCAA GGAGGTATGC GTTGTTGGCT GAAGATGGGG TTGTCAAGGT TCTTAATTTG 
GAGGAAGGTG GAGCTTTTAC TTCCAGTGGA GCTGAGGATA TGCTCAAGGC TCTCTGA 

Retrieve as FASTA