Entry information : TpsPxDo01
Entry ID 4129
Creation 2006-12-18 (Filippo Passardi)
Last sequence changes 2006-12-18 (Filippo Passardi)
Sequence status complete
Reviewer reviewer name not stored
Last annotation changes 2010-02-23 (Marcel Zamocky)
Peroxidase information: TpsPxDo01
Name TpsPxDo01
Class Short peroxidockerin    [Orthogroup: PxDo001]
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira
Organism Thalassiosira pseudonana    [TaxId: 35128 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value TpsPxDo01
start..stop
S start..stop
CYspPxDo2 303 2e-95 117..631 16..545
LspPxDo01 301 1e-93 152..639 165..661
CwaPxDo01 298 2e-93 174..639 74..555
MchtPxDo-rel 295 4e-92 122..641 25..546
Literature and cross-references TpsPxDo01
Literature [1] Zamocky M., Jakopitsch C., Furtmüller P.G., Dunand C. and Obinger C. (2007) Phylogenetic relationship in the peroxidase-cyclooxygenase superfamily. Proteins: Structure, Function, and Bioinformatics 72:589-605
[2] Armbrust,E.V., Berges,J.A., Bowler,C., Green,B.R., Martinez,D.,
Putnam,N.H., Zhou,S., Allen,A.E., Apt,K.E., Bechner,M.,
Brzezinski,M.A., Chaal,B.K., Chiovitti,A., Davis,A.K.,
Demarest,M.S., Detter,J.C., Glavina,T., Goodstein,D., Hadi,M.Z.,
Hellsten,U., Hildebrand,M., Jenkins,B.D., Jurka,J., Kapitonov,V.V.,
Kroger,N., Lau,W.W., Lane,T.W., Larimer,F.W., Lippmeier,J.C.,
Lucas,S., Medina,M., Montsant,A., Obornik,M., Parker,M.S.,
Palenik,B., Pazour,G.J., Richardson,P.M., Rynearson,T.A.,
Saito,M.A., Schwartz,D.C., Thamatrakoln,K., Valentin,K., Vardi,A.,
Wilkerson,F.P. and Rokhsar,D.S.
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306 (5693), 79-86 (2004)
Protein ref. UniProtKB:   B8BPZ7 (176..641)
DNA ref. GenBank:   AAFD01000071
Protein sequence: TpsPxDo01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   641 (618)
PWM (Da):   %s   70480.53 (68140.3)  
PI (pH):   %s   4.23 (4.19) Peptide Signal:   %s   cut: 24 range:24-641
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSTKGRSLAS LCLLTACLTY VGAERMLRSG KETEIINLRY SETAAEMDTM ETLSRDYTAI FGGVLGTDVT TATVPSQEPS PETIATTNEE TNSIDYSTIF KVQSTSSTIP HPVPDQSQGQ  LCPHLMLSLK QMANSNNTAT LLPNDIANIT GTTLLRRERA AFSDGMHAMD FDRPNPRDVS NAFADGGLIP NVLGATDWLW AFGQFLNHDI SQVNTKPGEI CNINVPPDDP FLDSNVTFLP  MNRSKFVITT DNDTEGVYNG NDTLHITVEA SVVAHQLNDI SSFINADNVY GNTMSRLDYI RSDDSSTTGR LRTSNANLLP KNTIGLTNRG GDTRADLFLA GDVRANENLG LTVVHTLWMR  EHNYWADHIR DSNADLSGDE VFAMARIIVE AENQKIVYDE FLPALLGENA IPTYEGYRSD VDGRLENVVS ACAYRIGHSM VGSDLLKDYG NGTVDKLPLE DAFFAPVQLE TGIDPFLRGL  ATNVCQEVDP FLVPALRNHL FSNQFDLVAL NIERARDHGI PDFNSIRASI GLEAFNNFDD FMFSQELASV YSDTNQIDCW IGMNAEPRID GLMVGETQQQ VLARNFAAIR DGDVNFYKNS 
ISDPDLLALI EETTLADVIR RNSDAPNSLD DISSNVFFVQ Q 

Retrieve as FASTA  
Remarks Complete sequence from genomic (Chromo 1, 2 exons). Strain="CCMP1335". Belongs to the 6th-subfamily - peroxidockers of mixed origin (possible LGT from bacteria). Signal sequence for secretion predicted with SignalP 3.0 Server: max. cleavage site probability 0.967 between pos. 23 and 24