Entry information : SscPGHS01 (PTGS1 / COX-1)
Entry ID 4138
Creation 2006-12-06 (Christophe Dunand)
Last sequence changes 2006-12-06 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-05 (Christophe Dunand)
Peroxidase information: SscPGHS01 (PTGS1 / COX-1)
Name (synonym) SscPGHS01 (PTGS1 / COX-1)
Class H synthase    [Orthogroup: PGHS001]
Taxonomy Eukaryota Metazoa Chordata Mammalia Suidae Sus
Organism Sus scrofa (Pig)    [TaxId: 9823 ]
Cellular localisation N/D
Tissue type Liver
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SscPGHS01
start..stop
S start..stop
OarPGHS01 1122 0 26..600 26..600
EcabPGHS01 1122 0 26..600 25..599
BtPGHS01 1116 0 26..600 26..600
HsPGHS01 1101 0 26..600 25..599
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 183048..183144 97 N° 2 183237..183326 90 N° 3 189990..190106 117 N° 4 190504..190644 141
N° 5 191269..191412 144 N° 6 194913..195094 182 N° 7 195206..195289 84 N° 8 197784..198030 247
N° 9 201559..201845 287 N° 10 206431..206578 148 N° 11 207998..209091 1094  
join(183048..183144,183237..183326,189990..190106,190504..190644,191269..191412, 194913..195094,195206..195289,197784..198030,201559..201845,206431..206578,20799 8..209091)


exon

Literature and cross-references SscPGHS01 (PTGS1 / COX-1)
Literature Uenishi,H., Eguchi,T., Suzuki,K., Sawazaki,T., Toki,D., Shinkai,H., Okumura,N., Hamasima,N. and Awata,T. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Nucleic Acids Res. 32 (DATABASE ISSUE), D484-D488 (2004)
Protein ref. UniProtKB:   Q9TT27 [Fragment]
DNA ref. GenBank:   NW_001886052.1 (183048..209091)
mRNA ref. GenBank:   AK232305.1
Cluster/Prediction ref. UniGene:   Ssc.1986
Protein sequence: SscPGHS01 (PTGS1 / COX-1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   600 (576)
PWM (Da):   %s   68800.82 (66135.2)  
PI (pH):   %s   7.7 (7.54) Peptide Signal:   %s   cut: 25 range:25-600
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSLRSLSLWF PLLLLLLPPP PALPEDPRAP APVNPCCYYP CQHQGICVRF GLDRYQCDCT RTGYSGPNCT IPELWTWLRT SLRPSPSFFH FLLTHGRWFW EFVNATFIRD MLMRLVLTVR  SNLIPSPPTY NTAHDYISWE SFSNVSYYTR ILPPVPQDCP TPMGTKGKKQ LPDAELLSRR FLLRRKFIPD PQGANLMFAF FAQHFTHQFF KTSGKMGPGF TKALGHGVDL GHIYGDNLER  QYHLRLFKDG KLKYQVLNGE MYPPSVEEAP VLMHYPRGVP PRSQMAMGQE VFGLLPGLML YATLWLREHN RVCDLLKAEH PTWDDEQLFQ TARLILIGET IKIVIEEYVQ QLSGYFLQLK  FDPELLFGVQ FQYRNRIAVE FNQLYHWHPL MPNSFRVGPQ DYSYEQFLFN TSMLMDYGVE ALVDAFSRQI AGRIGGGRNM DHHVLHVAVG LIKDSRELRL QPFNEYRKRF GLKPYTSFQE  LTGEKEMAAE LEELYGDIDA LEFYPGLLLE KCLPNSIFGE SMIEIGAPFS LKGLLGNPIC SPQYWKASTF GGEMGFNLVK TATLRKLVCL NTKTCPYVAF RVPDLRQEDG PGVERPSTEL 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 7 introns), mRNA and 48 ESTs. Strain="breed Yorkshire-Landrace".