Entry information : SscPGHS01 (PTGS1 / COX-1)
Entry ID 4138
Creation 2006-12-06 (Christophe Dunand)
Last sequence changes 2006-12-06 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-05 (Christophe Dunand)
Peroxidase information: SscPGHS01 (PTGS1 / COX-1)
Name (synonym) SscPGHS01 (PTGS1 / COX-1)
Class H synthase    [Orthogroup: PGHS001]
Taxonomy Eukaryota Metazoa Chordata Mammalia Suidae Sus
Organism Sus scrofa (Pig)    [TaxId: 9823 ]
Cellular localisation N/D
Tissue type Liver
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SscPGHS01
start..stop
S start..stop
OarPGHS01 1122 0 26..600 26..600
EcabPGHS01 1122 0 26..600 25..599
BtPGHS01 1116 0 26..600 26..600
HsPGHS01 1101 0 26..600 25..599
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 183048..183144 97 N° 2 183237..183326 90 N° 3 189990..190106 117 N° 4 190504..190644 141
N° 5 191269..191412 144 N° 6 194913..195094 182 N° 7 195206..195289 84 N° 8 197784..198030 247
N° 9 201559..201845 287 N° 10 206431..206578 148 N° 11 207998..209091 1094  
join(183048..183144,183237..183326,189990..190106,190504..190644,191269..191412, 194913..195094,195206..195289,197784..198030,201559..201845,206431..206578,20799 8..209091)


exon

Literature and cross-references SscPGHS01 (PTGS1 / COX-1)
Literature Uenishi,H., Eguchi,T., Suzuki,K., Sawazaki,T., Toki,D., Shinkai,H., Okumura,N., Hamasima,N. and Awata,T. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Nucleic Acids Res. 32 (DATABASE ISSUE), D484-D488 (2004)
Protein ref. UniProtKB:   Q9TT27 [Fragment]
DNA ref. GenBank:   NW_001886052.1 (183048..209091)
mRNA ref. GenBank:   AK232305.1
Cluster/Prediction ref. UniGene:   Ssc.1986
Protein sequence: SscPGHS01 (PTGS1 / COX-1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   600 (576)
PWM (Da):   %s   68800.82 (66135.2)  
PI (pH):   %s   7.7 (7.54) Peptide Signal:   %s   cut: 25 range:25-600
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, 7 introns), mRNA and 48 ESTs. Strain="breed Yorkshire-Landrace".