Entry information : BrPrx56-1Aa_other (Bra023509)
Entry ID 4267
Creation 2009-08-05 (Christophe Dunand)
Last sequence changes 2009-08-05 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-24 (Christophe Dunand)
Peroxidase information: BrPrx56-1Aa_other (Bra023509)
Name (synonym) BrPrx56-1Aa_other (Bra023509)
Class Class III peroxidase    [Orthogroup: Prx044]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica rapa    [TaxId: 3711 ]
Cellular localisation N/D
Tissue type Etiolated seedlings
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BrPrx56-1Aa_other
start..stop
S start..stop
BnPrx56-1_other 677 0 1..330 1..330
TsPrx56 573 0 1..330 1..329
BnPrx56-2_other 568 0 1..330 1..329
BrPrx56-1Ab_other 568 0 1..330 1..329
Literature and cross-references BrPrx56-1Aa_other (Bra023509)
Literature Parkin,I.A.P., Gulden,S.M., Sharpe,A.G., Lukens,L., Trick,M., Osborn,T.C. and Lydiate,D.J. Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 171 (2), 765-781 (2005)
DNA ref. GenBank:   AC189232 (113695..114991)   AC234724.1 (53060..54608)
EST ref. GenBank:   EX113474.1 [5' end]
Protein sequence: BrPrx56-1Aa_other (Bra023509)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (300)
PWM (Da):   %s   35936.35 (32568.6) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.47 (8.56) Peptide Signal:   %s   cut: 31 range:31-330
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MADLKMNISC FFFIQVLLLL LLSSFPPTNA QGLKVGFYDK TCPKAEAIVK KSVSDAMKND PTIGAPLLRM FFHDCFVRGC DGSVLLELKN KKDEKNAPPN LSLRGFEVID NVKAAVEEEC  PGVVSCSDVL ALVARDAVVE LDGLSWGVET GRRDGRVTNI NEARSNLPSP LNNITSLITQ FSSKGLDKKD LAVLSGGHTV GQGHCPLILN RLYNFTGKGD SDPDLDTEYA ATLRKKCKPT 
DTTTALEMDP GSFKTFDESY FKLVSQRRGF FQSDAALLNN KETKSYVLKQ MNSQGSTFSG DFGVSMVKMG RIGVLTGKAG EVRKKCRMVN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (3 introns) and 1 EST. Cultivar="Chiifu".