Entry information : LePrx02 (Solyc07g047740.2.1[2.3])
Entry ID 43
Creation 2006-07-13 (Christophe Dunand)
Last sequence changes 2006-07-13
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-22 (Messaoudi)
Peroxidase information: LePrx02 (Solyc07g047740.2.1[2.3])
Name (synonym) LePrx02 (Solyc07g047740.2.1[2.3])
Class Class III peroxidase    [Orthogroup: Prx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Solanum
Organism Lycopersicon esculentum (Tomato)    [TaxId: 4081 ]
Cellular localisation N/D
Tissue types Radicles
Roots
Inducer Nutrient deficiency (Al, Zn, P, K, Fe, N)
Repressor N/D
Best BLASTp hits
Perox score E-value LePrx02
start..stop
S start..stop
LePrx60 636 0 1..329 1..331
LePrx15 546 0 1..328 1..328
StPrx21 544 0 1..328 20..347
StPrx49 522 0 1..329 1..327
Literature and cross-references LePrx02 (Solyc07g047740.2.1[2.3])
Literature Botella,M.A., Quesada,M.A., Hasegawa,P.M. and Valpuesta,V. Nucleotide sequences of two peroxidase genes from tomato. Plant Physiol. 103 (2), 665-666 (1993)
Protein ref. UniProtKB:   Q07445
mRNA ref. GenBank:   L13653.1
Protein sequence: LePrx02 (Solyc07g047740.2.1[2.3])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa): %sProtein length in amino acid 329 (304)
PWM (Da): %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
35391 (32834.7) Transmb domain: %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i7-29o
PI (pH): %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
8.76 (8.88) Peptide Signal: %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 26 range:26-329
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAKFGDLSNF LVLCILVGIA GSSYGQLQLN FYAKSCPQAE KIIQDYVYKQ IPNAPSLAAA LLRMHFHDCF VRGCDGSVLL NFTSSTKNQT EKVAVPNQTL RGFSFIDGVK KAVEAECPGV  VSCADIVALV ARDSVVVTGG PYWKVPTGRR DGEISNASEA LANIPPPTSN FSSLQTSFAS KGLDLKDLVL LSGAHTIGVS HCPSFSSRLY NFTGVWGKKS SLDSEYAANL KMKKCKSIND 
NTTIVEMDPE SSSKFDLSYF QLVLRRKGLF QSDAALTTSA TTKSFINQLV QGSVKQFYAE PGAMEKMGKI EVKTGSAGEI RKHCAAVNS 

Retrieve as FASTA  
Remarks Complete sequence from 8 ESTs + 1 genomic.