Entry information : BnPrx06-1_other
Entry ID 436
Creation 2009-07-10 (Christophe Dunand)
Last sequence changes 2009-07-10 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2010-05-10 (Christophe Dunand)
Peroxidase information: BnPrx06-1_other
Name BnPrx06-1_other
Class Class III peroxidase     [Orthogroup: Prx009]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue type Embryos
Inducer Embryogenesis
Repressor N/D
Best BLASTp hits
Perox score E-value BnPrx06-1_other
start..stop
S start..stop
BoPrx06_other 389 1e-138 1..188 138..325
BrPrx06-1Aa_other 386 8e-138 1..188 138..325
TsPrx06 317 3e-110 1..188 138..322
BstrPrx79 315 8e-110 1..188 137..320
Literature and cross-references BnPrx06-1_other
Literature Malik,M.R., Wang,F., Dirpaul,J.M., Zhou,N., Polowick,P.L., Ferrie ,A.M. and Krochko,J.E. Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus. Plant Physiol. 144 (1), 134-154 (2007).
EST ref. GenBank:   ES271517.1 [3' end]
Protein sequence: BnPrx06-1_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   188
PWM (Da):   %s   21101.15  
PI (pH):   %s   6.67
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
RINVKYGRKD SLDSDMNRVE GKLARPNMTM DHIISIFGSA GLTVQEMVAL VGSHTIGFSH CKEFASRIFN SNVEHSADFC PEGMNAKYAA ELRKLCANYT KDAEMSAFND VFTPGKFDNM 
YYKNLQHGYG LLESDQAIAF DNRTRPFVDL YAANETAFFD AFAKAMGEFS EQRVKTELNG DVRRRCDQ 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. 5' is missing.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGGTCGGAGG TCCAAAGAAT CAACGTCAAA TACGGTCGCA AAGACAGTCT CGACTCCGAT ATGAACCGCG TCGAAGGAAA GCTAGCTCGC CCCAACATGA CGATGGACCA CATCATCTCC  ATCTTCGGAT CAGCTGGCTT GACCGTTCAA GAGATGGTGG CGCTCGTCGG ATCGCACACG ATCGGTTTTT CTCACTGCAA AGAGTTCGCG AGCCGCATCT TCAACAGCAA CGTCGAGCAC  AGCGCTGACT TTTGCCCCGA AGGGATGAAC GCGAAATACG CGGCGGAGCT GAGGAAGCTC TGCGCGAACT ACACCAAGGA CGCGGAGATG TCTGCGTTTA ATGACGTTTT TACCCCTGGG  AAGTTCGACA ACATGTATTA CAAGAACTTG CAGCACGGCT ACGGGCTGCT CGAGTCGGAC CAGGCGATTG CGTTTGATAA CAGGACGCGT CCGTTTGTTG ATCTTTACGC GGCGAACGAA 
ACGGCGTTCT TCGACGCGTT TGCGAAGGCC ATGGGGGAGT TTAGCGAGCA GAGGGTGAAG ACGGAGTTAA ATGGAGACGT TCGAAGGCGG TGCGACCAGT 

Retrieve as FASTA