Entry information : PtroPrxV
Entry ID 4449
Creation 2007-01-25 (Filippo Passardi)
Last sequence changes 2007-01-25 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2010-11-23 (Myriam Duval (Scipio))
Peroxidase information: PtroPrxV
Name PtroPrxV
Class Atypical 2-Cysteine peroxiredoxin (type V)    [Orthogroup: PrxV001]
Taxonomy Eukaryota Metazoa Chordata Mammalia Hominidae Pan
Organism Pan troglodytes (chimpanzee)    [TaxId: 9598 ]
Cellular localisation Mitochondria
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtroPrxV
start..stop
S start..stop
GgoPrxV 423 1e-153 1..214 1..214
HsPrxV 421 1e-152 1..214 1..214
PpyPrxV 395 1e-142 1..214 1..216
PabePrxV 393 9e-142 1..214 1..217
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 62721080..62721250 171 N° 2 62722922..62723056 135 N° 3 62723848..62723979 132 N° 4 62724052..62724090 39
N° 5 62724194..62724255 62 N° 6 62724707..62724812 106  
join(62721080..62721250,62722922..62723056,62723848..62723979,62724052..62724090 ,62724194..62724255,62724707..62724812)


exon

Literature and cross-references PtroPrxV
Protein ref. GenPept:   XP_001164621
DNA ref. GenBank:   NC_006478.2 (62721080..62724812)
Protein sequence: PtroPrxV
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   214
PWM (Da):   %s   21827.39  
PI (pH):   %s   9.07
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGGWASGGVRSFSRAAAAMAPIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL

Retrieve as FASTA  
Remarks Complete sequence Genomic (Chromo 11, 5 introns). No EST. Four other transcript variants predicted, but this one (variant 5) gives a full PrxV with high identity to the other PrxV.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGACTAGCTGGCGTGTGCGCCCTGAGACGCTCAGCGGGCTATATACTCGTCGGTGGGGCCGGCGGTCAGTCTGCGGCAGCGGCAGCAAGACGGTGCAGTGAAGGAGGGTGGGCGTCT
GGCGGGGTCCGCAGTTTCAGCAGAGCCGCTGCAGCCATGGCCCCAATCAAG
GTGACCGCTGGCCCGGCCGGGCCTGACATCCCCCACTACCCTCATGGCAATCCCCGTCCCGCTGGTCTG
AGAGTATCGCCTTATTTCCTGCCTGCCAGACCCCTCCCCGCCGCCCGCCCGGTTCATCCCTTTCAAGGCCCTTTTTGCTGCCACCTTACTCGCAAATAATGGGGGACTAAACTCCGTGGA
CATTTCTTCTCCTTTTGTTTTTGTCTTTTTTTTTTTTTGAGATGTATTCTTTTTTCCCTCCTGTGTGTGTGAGTGAAATAACCTCTTTTTTGCTCCCCGCCCCCTCTGCTTTGGGGGTTC
CCAACTATACTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGGTGGATTCCTGATTTCCCCTATCTTCTGAAACAGCTGTCCCTTAGCGCCCCCGCGGGGGCTTCCCCCATCCCACTCC
ACGACCTCCCCTCCCCCCATGGCGAATTCCCACCTTTTTGTCTTGTCTTTCACTCACTTCCTGGAACCGTCCCCAGGGCCTTGGACCTTCCCCCTTCTCCTCCCAAACCTTGTGAGACCC
CATTCCCTTTCTACTTCATCCTGCTCTCAACCTTTGGGCTCCTCAGAGGCCCTCACCTCTGACTCTCTCTCCCTACCCACTCTGGTCCCATGAAGCCCTCAAGTACTCTGGGGATGGATC
CTTCCCCCTTCAAAAGATTCCTTCTTTTGTTCTACACCTCCTGGGTGTAGGGGCCTGGACACCCTCCCCCAACGTTCCACCTGCCGCTGCCCTTCCTCTTCCTCCTCCTGAGGGTGGGAC
CCTCAGACCTGGCCAAGATCCTCTCCCTCCATGTTGTCAGGGATTCCTCCTCACCCCCAAATACAGCCCTCTAGCCCCTGTCCATTTTATTCCACTCCTTTCCTGTAACCTAGACAGCAT
GTTATGCAACCCTTTGCGACACATGGGGAAACCTTCCCTCCCTTTCTCTGTTGTCACCAATGGCCCCTTAAGAGGAGCAGGGCCACCGTGAAACTTGGAGGATATGGGGTAACCCAGTGG
GAGCGGGCAGGGAGGGCCCTTGGAAACTGACAGGGCTGGAGTATCCTGCTGGGTTTCAGCCCCGGTTCCTGCAGGCACAGCTGCCAGGCTCTCTGTTCACCTTCCTGCCTCTGGTTTGCC
CCGGCTCCCTCACCCCACTTACCCTGGAGTCCTTCCTTCTAGGTGGGAGATGCCATCCCAGCAGTGGAGGTGTTTGAAGGGGAGCCAGGGAACAAGGTGAACCTGGCAGAGCTGTTCAAG
GGCAAGAAGGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGATGTTCCAAG
GTGAGGCCCTTCCCCTTCTGAAGATCAGGACCTGGGATCTTTTGTGTTGCTCTTAAGTCCTCC
ACATAGTCCTGATAGGACTCCTAAAAAGCATTTCAGTGCCATCAGAAAACAAGTAGAGCTGGGTAGAGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCG
GGTGGATCACGAGGTCAGGAGTTCAAAACCAGCCTGGCCAAGATGGTGAAACCCTGTCTCTACTAAAAATGCAAAAAAAATCAGCCGGACATGGTGGCGGGCGCCTGTAATCCCAGGTAC
TGGGGAGGCTGAGGCAGAGAATTGCTTGAACCTAGGAGGCGTAGGTTGCAGTGAGTGGAGATCGTGCCTCTGCAGTCCAGCCTGGGTGAAAGAGCGAGACTCCGTCTCAAAATAAAAAAA
AAAAAAGAAAACAAGTAGAGACTGCAAAAAGGGAACAGTACCAGGAATGTTGGAGAAAAACATACTACAATTAAATCCAACACCCCTGTTGGTCCTGCTAAATGACAGGCACTGTGGAAG
GTGCTTGGGACTCAGATAAATAAAACATAGATCTGCCCATGGAAAGTTCACGTCTGGACCATAAGGCATTAGGTTTCATTCTGAGCTTCCTAATGGCCAAGGCAAAAAGGAAATAGAATG
GTTTGGACAGCTCTCCTTGTCTGATCAAAGGTGTTGAGGCAGAGCACTGAGGAGGGCCTGGAGATAACGGGTGGGCTGGGGGTCAGATGCAGTTATCCCTTTGCCGACCATTTGTTCCCC
TTCCTCAGACCCACCTGCCAGGGTTTGTGGAGCAGGCTGAGGCTCTGAAGGCCAAGGGAGTCCAGGTGGTGGCCTGTCTGAGTGTTAATGATGCCTTTGTGACTGGCGAGTGGGGCCGAG
CCCACAAGGCGGAAGGCAAG
GTGAGGTGCGGGGCCTGCAGGGAGTCAGGACCAGGTAGGATATTCTTCTTGTGACCTTTACTTTCTCTGCAGGTTCGGCTCCTGGCTGATCCCACTGGGG
CCTTTGGGAAG
GTGAGTGTTCCCCTGACCGCCACAGGGACATGGCAGTGCGGGGAGCAGTGGGGGCCCTTGGCCTCTTCAAGGATTTCTGACACTTTTCTCTGTCTCTTCTTAGGAGACA
GACTTATTACTAGATGATTCGCTGGTGTCCATCTTTGGGAATCGACGTCTCAAGAG
GTAAAAGTGGAGAGTCCTCTGTGGAGAGAGTCCTCTGTGGGAGAGAGTCCTCTGTGGAGAGGGT
CCTCTGTGGGAAGAGTCATCTGTGGGGGAGAGTCCTCTGTGTGGGAGAGTCGTCTGTGGGGAGAGTCCTGTGTGGGGAGAGTCCTCTGTGGAGAGAGTCCTCTGTGGGGGAGAGTCCTGT
GTGGGGGAGAGTCCTCTGTGGGGAGAGTCCTCTGTGTGGAGAGAGTCCTGTGTGGGAGAGAGTCCTGTGTGGGGGAGAGTCCTCTGTGGGGAGAGTCCTCTGTGTGGAGAGAGTCGTGTG
TGGTGGTGAGTCCTCTGTGGGGGAGAGTCCTCTGTGGGGGGAGTCCTCTCTGGAGTTCTCTTGGGCCCCTGGCTGTTCACTGCCTGTCTCCATGCCCAGTCTCCAGGCCCAGGCTGATGC
AGCTGGCTGGGCCCCTCTTTCCGGCAGGTTCTCCATGGTGGTACAGGATGGCATAGTGAAGGCCCTGAATGTGGAACCAGATGGCACAGGCCTCACCTGCAGCCTGGCACCCAATATCAT
CTCACAGCTCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGACTAGCTGGCGTGTGCGCCCTGAGACGCTCAGCGGGCTATATACTCGTCGGTGGGGCCGGCGGTCAGTCTGCGGCAGCGGCAGCAAGACGGTGCAGTGAAGGAGGGTGGGCGTCT
GGCGGGGTCCGCAGTTTCAGCAGAGCCGCTGCAGCCATGGCCCCAATCAAG
GTGGGAGATGCCATCCCAGCAGTGGAGGTGTTTGAAGGGGAGCCAGGGAACAAGGTGAACCTGGCAGAG
CTGTTCAAGGGCAAGAAGGGTGTGCTGTTTGGAGTTCCTGGGGCCTTCACCCCTGGATGTTCCAAG
ACCCACCTGCCAGGGTTTGTGGAGCAGGCTGAGGCTCTGAAGGCCAAGGGAGTC
CAGGTGGTGGCCTGTCTGAGTGTTAATGATGCCTTTGTGACTGGCGAGTGGGGCCGAGCCCACAAGGCGGAAGGCAAG
GTTCGGCTCCTGGCTGATCCCACTGGGGCCTTTGGGAAGGAG
ACAGACTTATTACTAGATGATTCGCTGGTGTCCATCTTTGGGAATCGACGTCTCAAGAG
GTTCTCCATGGTGGTACAGGATGGCATAGTGAAGGCCCTGAATGTGGAACCAGATGGCACA
GGCCTCACCTGCAGCCTGGCACCCAATATCATCTCACAGCTCTGA

Retrieve as FASTA