Entry information : RsoAhpD_GMI1000
Entry ID 4615
Creation 2007-02-15 (Filippo Passardi)
Last sequence changes 2013-08-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-08-14 (Christophe Dunand)
Peroxidase information: RsoAhpD_GMI1000
Name RsoAhpD_GMI1000
Class Alkylhydroperoxidase D    [Orthogroup: AhpD001]
Taxonomy Bacteria Proteobacteria Betaproteobacteria Burkholderiaceae Ralstonia
Organism Ralstonia solanacearum    [TaxId: 305 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RsoAhpD_GMI1000
start..stop
S start..stop
RpiAhpD 306 2e-108 1..173 1..173
RsoAhpD_UW551 275 2e-96 1..175 1..175
RmAhpD 265 2e-92 1..173 1..173
BcAhpD 263 8e-92 1..173 1..173
Literature and cross-references RsoAhpD_GMI1000
Literature Salanoubat M. et al. Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415 (6871), 497-502 (2002)
Protein ref. GenPept:   CAD15347 UniProtKB:   Q8XYW1
DNA ref. GenBank:   NC_003295.1 (1769778..1769251)
Protein sequence: RsoAhpD_GMI1000
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   175
PWM (Da):   %s   18643.42  
PI (pH):   %s   6.51
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MDFLQAIKAR IPDYAKDIRL NLDGTLARSS LQGSDAMGVA LAAAFAARSK VIADAIRDAG VLSPEEVNGA LSAAALMGMN NVWYPYVEMA DDADLAQQPA ELRMNAYAGS GGVDKRRFEM 
YALAASIVGK CHFCIQSHYA QLKRHQDMTT QQLRDVGRIA AVIHAAALVI AAESA 

Retrieve as FASTA  
Remarks Complete sequence from Genomic. Strain="GMI1000".
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGACTTCC TTCAAGCGAT CAAGGCGCGC ATTCCCGACT ACGCCAAGGA CATCCGCCTG AACCTGGACG GCACCCTCGC GCGCTCGTCG CTGCAAGGCA GTGACGCCAT GGGCGTGGCG  CTGGCGGCGG CCTTCGCAGC CCGGAGCAAG GTGATCGCCG ATGCCATCCG CGATGCCGGC GTGCTGTCGC CGGAGGAAGT CAACGGCGCT CTGAGCGCGG CCGCGCTGAT GGGCATGAAC  AACGTCTGGT ACCCCTACGT CGAGATGGCG GACGACGCCG ACCTCGCGCA GCAGCCGGCC GAACTGCGCA TGAACGCCTA CGCCGGCAGC GGCGGCGTCG ACAAGCGCCG CTTCGAGATG  TATGCGCTGG CCGCGTCCAT CGTCGGCAAG TGCCATTTCT GCATCCAGTC GCACTACGCG CAGCTGAAGC GCCACCAGGA CATGACGACG CAGCAGTTGC GCGATGTCGG CCGGATCGCG 
GCGGTGATCC ACGCGGCGGC ACTGGTGATC GCGGCGGAAT CGGCGTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGACTTCC TTCAAGCGAT CAAGGCGCGC ATTCCCGACT ACGCCAAGGA CATCCGCCTG AACCTGGACG GCACCCTCGC GCGCTCGTCG CTGCAAGGCA GTGACGCCAT GGGCGTGGCG  CTGGCGGCGG CCTTCGCAGC CCGGAGCAAG GTGATCGCCG ATGCCATCCG CGATGCCGGC GTGCTGTCGC CGGAGGAAGT CAACGGCGCT CTGAGCGCGG CCGCGCTGAT GGGCATGAAC  AACGTCTGGT ACCCCTACGT CGAGATGGCG GACGACGCCG ACCTCGCGCA GCAGCCGGCC GAACTGCGCA TGAACGCCTA CGCCGGCAGC GGCGGCGTCG ACAAGCGCCG CTTCGAGATG  TATGCGCTGG CCGCGTCCAT CGTCGGCAAG TGCCATTTCT GCATCCAGTC GCACTACGCG CAGCTGAAGC GCCACCAGGA CATGACGACG CAGCAGTTGC GCGATGTCGG CCGGATCGCG 
GCGGTGATCC ACGCGGCGGC ACTGGTGATC GCGGCGGAAT CGGCGTAA 

Retrieve as FASTA