Entry information : UmHCMDn
Entry ID 4657
Creation 2007-02-15 (Filippo Passardi)
Last sequence changes 2007-02-15 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-04-03 (Catherine Mathe (Scipio))
Peroxidase information: UmHCMDn
Name UmHCMDn
Class Hydrolase-CMD fusion (no peroxidase activity)    [Orthogroup: HCMDn001]
Taxonomy Eukaryota Fungi Basidiomycota Ustilaginomycetes Ustilaginaceae Ustilago
Organism Ustilago maydis    [TaxId: 5270 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value UmHCMDn
start..stop
S start..stop
CcinHCMDn 338 8e-111 4..501 7..550
LbiHCMDn 293 5e-93 7..493 18..566
CcinHCMDn[P] 154 9e-43 252..501 30..342
GzCMDn02 127 1e-34 3..200 2..182
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 30607..32112 1506  
join(30607..32112)


exon

Literature and cross-references UmHCMDn
Literature Kamper J. et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444 (7115), 97-101 (2006)
Protein ref. GenPept:   EAK86961 UniProtKB:   Q4P1M4
DNA ref. JGI genome:   contig_1_224 (30607..32112)
EST ref. GenBank:   EH019569.1 [3' end]
Protein sequence: UmHCMDn
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   501
PWM (Da):   %s   53183.22  
PI (pH):   %s   5.67
Sequence
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Send to Peroxiscan
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MPRIPYRYPA AGADPIADAI RERRGARGLT PLDGSLLNAP AIANGWNTLL GATRTKNSIP DDVREMMILR VAAHNSANFE WIQHAPVAEK AGCTTAQLAA VRDVRAPLST SSVLSPLAKA  ALALADDMTT KVKVQDSTFA LLKSAFANNV KELGDSGKLD GFEGEDLVNR KLAEATLTVA VYNMVSRFLV AIDVDDRANT PVPKPEGSEH VQDQATLSLP VNGPSSSAGR GLVQLPDGQL  LSTRVHFHSM TAPWIVLVNS LMTNLSMWDA VIPALSSRFN ILSYDQRGHG SSAIPAEPCT IAQLSDDVAF LLDSLAVKKA YAVIGVSQGG ATALSFALRH PDRYEKLVAC DTQPSTPAAN  VAAWDERIAL ARSKGMDELA AVTVPRWYGP GSQASAECRA RTEEMVKATQ VEGFAAGARA LQNYDLIQDG IVEAFSKASS SRHLLLAGEA DGKLPETLQA FTSKLAEAGA NAEFVSIPSA 
GHLPMCDNPD AWLEPVLKFL A 

Retrieve as FASTA  
Remarks Complete sequence from Genomic (Chromo 21, no intron)and 1 EST. Strain="521". Note that the hydrolase protein is placed DOWNSTREAM from the CMD domain (unlike most of HCMD proteins).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCACGAA TCCCTTATAG ATATCCGGCG GCCGGCGCGG ACCCGATTGC CGATGCCATC CGAGAACGAC GGGGAGCCCG AGGACTCACT CCACTAGACG GGTCGTTGCT CAATGCGCCC  GCCATCGCCA ACGGCTGGAA TACGCTGTTG GGAGCTACCA GGACCAAGAA CTCAATTCCC GATGATGTGC GAGAGATGAT GATCCTGCGT GTTGCCGCGC ACAATTCGGC CAACTTTGAA  TGGATCCAGC ATGCGCCTGT CGCTGAAAAG GCCGGCTGTA CCACCGCGCA GCTGGCAGCG GTACGTGATG TGCGAGCACC CTTGTCGACG TCCTCGGTGC TTAGCCCACT TGCAAAGGCC  GCACTCGCGC TCGCCGATGA CATGACCACC AAGGTCAAAG TTCAAGACTC AACCTTTGCG TTGCTCAAGT CGGCTTTCGC CAACAACGTC AAGGAGCTCG GCGACAGCGG CAAGCTAGAT  GGATTCGAGG GCGAAGATCT AGTCAATAGG AAGCTTGCAG AGGCTACGCT CACGGTGGCC GTGTACAACA TGGTGTCTCG TTTCCTTGTT GCTATTGATG TCGACGACCG TGCTAACACG  CCAGTTCCGA AGCCTGAAGG CAGCGAGCAC GTCCAAGATC AAGCTACTCT CTCCCTTCCT GTCAATGGAC CCAGCTCATC AGCAGGCAGA GGCCTCGTGC AGCTTCCAGA TGGTCAGCTG  CTGAGCACGC GTGTCCATTT CCACAGCATG ACAGCTCCCT GGATCGTTCT AGTCAACTCG CTCATGACCA ACCTGAGCAT GTGGGATGCC GTCATTCCGG CACTTTCGTC ACGCTTCAAC  ATTCTTTCCT ACGACCAGAG AGGACACGGT AGTTCTGCTA TTCCTGCTGA GCCTTGCACG ATTGCACAGC TTTCAGATGA CGTCGCCTTC TTGCTGGATA GTCTGGCGGT GAAGAAGGCG  TATGCGGTGA TTGGAGTGTC TCAGGGTGGT GCCACCGCCC TTTCCTTTGC GCTGCGTCAT CCAGACAGGT ACGAGAAGCT GGTGGCTTGT GATACGCAGC CAAGCACACC TGCTGCCAAT  GTGGCTGCTT GGGACGAGCG CATTGCCTTG GCTAGGAGTA AGGGAATGGA TGAACTGGCG GCTGTCACGG TGCCACGATG GTATGGTCCT GGTTCGCAGG CTAGCGCAGA GTGCAGAGCA  AGGACAGAAG AGATGGTTAA GGCGACACAG GTAGAAGGCT TTGCCGCCGG TGCGCGCGCT CTGCAGAACT ACGATCTGAT TCAGGATGGC ATTGTGGAGG CGTTCAGCAA AGCGTCTTCG  AGTCGTCATC TGCTCCTTGC TGGCGAAGCG GACGGCAAGC TTCCAGAAAC GCTCCAAGCG TTTACTTCCA AGCTCGCCGA GGCGGGCGCC AACGCGGAGT TCGTCAGCAT CCCCAGCGCT 
GGACACTTGC CCATGTGCGA CAATCCAGAC GCTTGGCTCG AGCCTGTTCT TAAGTTTCTT GCCTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCCACGAA TCCCTTATAG ATATCCGGCG GCCGGCGCGG ACCCGATTGC CGATGCCATC CGAGAACGAC GGGGAGCCCG AGGACTCACT CCACTAGACG GGTCGTTGCT CAATGCGCCC  GCCATCGCCA ACGGCTGGAA TACGCTGTTG GGAGCTACCA GGACCAAGAA CTCAATTCCC GATGATGTGC GAGAGATGAT GATCCTGCGT GTTGCCGCGC ACAATTCGGC CAACTTTGAA  TGGATCCAGC ATGCGCCTGT CGCTGAAAAG GCCGGCTGTA CCACCGCGCA GCTGGCAGCG GTACGTGATG TGCGAGCACC CTTGTCGACG TCCTCGGTGC TTAGCCCACT TGCAAAGGCC  GCACTCGCGC TCGCCGATGA CATGACCACC AAGGTCAAAG TTCAAGACTC AACCTTTGCG TTGCTCAAGT CGGCTTTCGC CAACAACGTC AAGGAGCTCG GCGACAGCGG CAAGCTAGAT  GGATTCGAGG GCGAAGATCT AGTCAATAGG AAGCTTGCAG AGGCTACGCT CACGGTGGCC GTGTACAACA TGGTGTCTCG TTTCCTTGTT GCTATTGATG TCGACGACCG TGCTAACACG  CCAGTTCCGA AGCCTGAAGG CAGCGAGCAC GTCCAAGATC AAGCTACTCT CTCCCTTCCT GTCAATGGAC CCAGCTCATC AGCAGGCAGA GGCCTCGTGC AGCTTCCAGA TGGTCAGCTG  CTGAGCACGC GTGTCCATTT CCACAGCATG ACAGCTCCCT GGATCGTTCT AGTCAACTCG CTCATGACCA ACCTGAGCAT GTGGGATGCC GTCATTCCGG CACTTTCGTC ACGCTTCAAC  ATTCTTTCCT ACGACCAGAG AGGACACGGT AGTTCTGCTA TTCCTGCTGA GCCTTGCACG ATTGCACAGC TTTCAGATGA CGTCGCCTTC TTGCTGGATA GTCTGGCGGT GAAGAAGGCG  TATGCGGTGA TTGGAGTGTC TCAGGGTGGT GCCACCGCCC TTTCCTTTGC GCTGCGTCAT CCAGACAGGT ACGAGAAGCT GGTGGCTTGT GATACGCAGC CAAGCACACC TGCTGCCAAT  GTGGCTGCTT GGGACGAGCG CATTGCCTTG GCTAGGAGTA AGGGAATGGA TGAACTGGCG GCTGTCACGG TGCCACGATG GTATGGTCCT GGTTCGCAGG CTAGCGCAGA GTGCAGAGCA  AGGACAGAAG AGATGGTTAA GGCGACACAG GTAGAAGGCT TTGCCGCCGG TGCGCGCGCT CTGCAGAACT ACGATCTGAT TCAGGATGGC ATTGTGGAGG CGTTCAGCAA AGCGTCTTCG  AGTCGTCATC TGCTCCTTGC TGGCGAAGCG GACGGCAAGC TTCCAGAAAC GCTCCAAGCG TTTACTTCCA AGCTCGCCGA GGCGGGCGCC AACGCGGAGT TCGTCAGCAT CCCCAGCGCT 
GGACACTTGC CCATGTGCGA CAATCCAGAC GCTTGGCTCG AGCCTGTTCT TAAGTTTCTT GCCTGA 

Retrieve as FASTA