Entry information : SwHCMDn
Entry ID 4688
Creation 2007-02-16 (Filippo Passardi)
Last sequence changes 2007-02-16 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2007-03-16 (Christophe Dunand)
Peroxidase information: SwHCMDn
Name SwHCMDn
Class Hydrolase-CMD fusion (no peroxidase activity)    [Orthogroup: HCMDn001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Sphingomonadaceae Sphingomonas
Organism Sphingomonas wittichii    [TaxId: 160791 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SwHCMDn
start..stop
S start..stop
CcrHCMDn 468 2e-165 1..389 1..392
SuHCMDn 292 7e-97 1..379 1..367
ReHCMDn_H16 263 5e-85 1..390 1..388
RmHCMDn 250 4e-80 1..390 1..388
Literature and cross-references SwHCMDn
Literature Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.

CONSRTM US DOE Joint Genome Institute (JGI-PGF)

Sequencing of the draft genome and assembly of Sphingomonas
wittichii RW1

Unpublished

Submitted (20-NOV-2006)
Protein ref. GenPept:   EAW05161 UniProtKB_Uniparc:   A0XIB1
DNA ref. GenBank:   AAVK01000001 (30787..31980)
Protein sequence: SwHCMDn
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   397
PWM (Da):   %s   42108.92  
PI (pH):   %s   4.92
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAFTLRGDVR LHWRLDGSDE RPPLVLLNSI GTDISLWDRT VPHLLPTFRL LRIDVRGHGA SDAPAGDYDL AMLADDVAAV MDDAGIAVAP VAGVSLGGMI AMEIALRHPD KVAALALICT  SGAMDPAAWA ARVDAVRDGG TGAIADMAIE RFLSSDFIVR HPEIAESLKR AIRAQADDGY VGAAAAIRDM ALADRIGAIA VPTLVVTGAV DISTPYEGHG DRLVHSIPGA VRAVVAGAHL  PPIEAPGQLA ARIQSFLLGD AAIVEAADTL FEAGLVHRRR VLGDDWVDRS LTKRTAFNAD FQALITRIAW GEIWSRPGLD DRTRRLLVVA ITASLGCWEE FALHVRAGLG QSGFTRDELK 
EVLMQTAIYA GVPAANTAFA EAQRIIAELD GDAGYRR 

Retrieve as FASTA  
Remarks Complete sequence from Genomic. Strain="RW1".