Entry information : VpDCMDn
Entry ID 4720
Creation 2007-02-22 (Filippo Passardi)
Last sequence changes 2007-02-22 (Filippo Passardi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2007-11-30 (Christophe Dunand)
Peroxidase information: VpDCMDn
Name VpDCMDn
Class Double CMD (no peroxidase activity)    [Orthogroup: DCMDn001]
Taxonomy Bacteria Proteobacteria Gammaproteobacteria Vibrionaceae Vibrio
Organism Vibrio parahaemolyticus    [TaxId: 670 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VpDCMDn
start..stop
S start..stop
AdAlkyPrxn 218 1e-69 39..248 37..246
BtheAlkyPrxn02 169 1e-49 42..228 27..212
SmeDCMDn 79 7e-18 42..249 49..246
MbaDCMDn 75 2e-16 42..218 47..221
Literature and cross-references VpDCMDn
Literature 1.
Nasu,H., Iida,T., Sugahara,T., Yamaichi,Y., Park,K.S., Yokoyama,K.,
Makino,K., Shinagawa,H. and Honda,T.

A filamentous phage associated with recent pandemic Vibrio
parahaemolyticus O3:K6 strains

J. Clin. Microbiol. 38 (6), 2156-2161 (2000)


2.
Makino,K. et al.

Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism
distinct from that of V cholerae

Lancet 361 (9359), 743-749 (2003)
Protein ref. GenPept:   BAC63053 UniProtKB:   Q87FG9
DNA ref. GenBank:   BA000032 (1829159..1829908)
Protein sequence: VpDCMDn
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   249
PWM (Da):   %s   26995.17 Transmb domain:   %s   i20-39o
PI (pH):   %s   5.35
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MVNQRKVLTM IAIKTSIKSI LIWVLTMTTI SAVMPAFATD KLSNKERAIV PIAAFTASGD VEKLKISLND GLESGLTINE IKEVLAQLYA YAGFPRSLNG LAAFMDVVEV RKNRGITDTL  GRESTPLSTD KSSLELGSQN QTTLVGMQVK GPLFDFSPQI DQYLKAHLFG DIFARDLLTW KQREIATIAA LANIKGVNSQ LAAHYNISMN NGVSAEELND FILVLKQCCD ESIASNAQSV 
LDSVLDAKN 

Retrieve as FASTA  
Remarks Complete sequence from Genomic (chromo 2). Strain="RIMD 2210633". Serotype="O3:K6".