Entry information : SmeDCMDn
Entry ID 4724
Creation 2007-02-22 (Filippo Passardi)
Last sequence changes 2016-01-22 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-01-25 (Christophe Dunand)
Peroxidase information: SmeDCMDn
Name SmeDCMDn
Class Double CMD (no peroxidase activity)    [Orthogroup: DCMDn001]
Taxonomy Bacteria Proteobacteria Alphaproteobacteria Rhizobiaceae Sinorhizobium
Organism Sinorhizobium meliloti    [TaxId: 382 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmeDCMDn
start..stop
S start..stop
BjaDCMDn 305 1e-105 22..245 43..266
BjaDCMDn 90 1e-21 19..118 167..266
RleDCMDn 275 8e-94 1..245 29..273
PstDCMDn 260 6e-88 24..247 38..261
AvDCMDn 260 3e-87 5..246 71..308
Literature and cross-references SmeDCMDn
Literature Barnett M.J. et al., Nucleotide sequence and predicted functions of the entire
Sinorhizobium meliloti pSymA megaplasmid. Proc. Natl. Acad. Sci. U.S.A. 98 (17), 9883-9888 (2001)
Protein ref. GenBank:   AAK64950.2 UniProtKB:   Q930A6
DNA ref. GenBank:   AE006469.1 (297048..297791)
Protein sequence: SmeDCMDn
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   247
PWM (Da):   %s   26888.77  
PI (pH):   %s   5.1
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MMTTSNAGAQ QPNVEGRRFS PDQVRSVAPA LEQYTQQRLY GDVWQRPGLN RRDRSLVTIA ALIARGEAPA LTYYADQALE NGVKPSEISE TITHLAYYSG WGKAMATVGP VSEAFAKRGI  GQDQLAAVES TPLPLDEEAE AQRATTVGNQ FGSVAPGLVQ YTTDYLFRDL WLRPDLAPRD RSLVTIAALI SVGQVEQITF HLNKALDNGL SEEQAAEVIT HLAFYAGWPN AMSALPVAKA 
VFEKRRG 

Retrieve as FASTA  
Remarks Complete sequence from Genomic (plasmid="pSymA"). Strain="1021".
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGATGACCA CCTCGAATGC AGGGGCTCAA CAGCCCAATG TTGAAGGTCG CCGTTTCTCG CCCGATCAGG TTCGATCGGT GGCGCCCGCC CTCGAGCAGT ACACGCAACA ACGCCTCTAT  GGCGACGTCT GGCAGCGCCC CGGCCTCAAT CGGCGCGATC GCAGCCTTGT CACGATCGCC GCGCTGATTG CGCGGGGAGA AGCCCCGGCT CTCACCTACT ACGCCGATCA AGCGCTTGAG  AACGGAGTGA AGCCTTCCGA GATCTCGGAG ACGATCACGC ATCTGGCGTA TTATTCGGGT TGGGGAAAAG CCATGGCCAC GGTCGGTCCG GTGAGTGAAG CCTTCGCCAA GCGCGGCATC  GGTCAGGATC AGCTCGCCGC CGTCGAATCC ACGCCGTTGC CGCTGGACGA AGAGGCGGAA GCACAACGCG CAACCACTGT CGGCAACCAG TTCGGCAGCG TTGCCCCCGG CCTCGTTCAG  TACACGACGG ACTATCTCTT CCGTGACCTA TGGCTGCGCC CCGACCTGGC GCCGCGCGAT CGCAGCCTTG TGACAATCGC TGCACTGATC TCAGTTGGCC AGGTCGAACA GATCACCTTC  CACCTGAACA AAGCCCTGGA CAATGGGCTG AGCGAAGAAC AGGCCGCCGA AGTCATCACG CATCTGGCTT TCTACGCAGG CTGGCCCAAC GCGATGTCGG CGTTGCCGGT GGCGAAGGCC 
GTCTTTGAAA AGCGGCGCGG CTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGATGACCA CCTCGAATGC AGGGGCTCAA CAGCCCAATG TTGAAGGTCG CCGTTTCTCG CCCGATCAGG TTCGATCGGT GGCGCCCGCC CTCGAGCAGT ACACGCAACA ACGCCTCTAT  GGCGACGTCT GGCAGCGCCC CGGCCTCAAT CGGCGCGATC GCAGCCTTGT CACGATCGCC GCGCTGATTG CGCGGGGAGA AGCCCCGGCT CTCACCTACT ACGCCGATCA AGCGCTTGAG  AACGGAGTGA AGCCTTCCGA GATCTCGGAG ACGATCACGC ATCTGGCGTA TTATTCGGGT TGGGGAAAAG CCATGGCCAC GGTCGGTCCG GTGAGTGAAG CCTTCGCCAA GCGCGGCATC  GGTCAGGATC AGCTCGCCGC CGTCGAATCC ACGCCGTTGC CGCTGGACGA AGAGGCGGAA GCACAACGCG CAACCACTGT CGGCAACCAG TTCGGCAGCG TTGCCCCCGG CCTCGTTCAG  TACACGACGG ACTATCTCTT CCGTGACCTA TGGCTGCGCC CCGACCTGGC GCCGCGCGAT CGCAGCCTTG TGACAATCGC TGCACTGATC TCAGTTGGCC AGGTCGAACA GATCACCTTC  CACCTGAACA AAGCCCTGGA CAATGGGCTG AGCGAAGAAC AGGCCGCCGA AGTCATCACG CATCTGGCTT TCTACGCAGG CTGGCCCAAC GCGATGTCGG CGTTGCCGGT GGCGAAGGCC 
GTCTTTGAAA AGCGGCGCGG CTAA 

Retrieve as FASTA